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. 2012 Mar 31;2012:bas013. doi: 10.1093/database/bas013

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© The Author(s) 2012. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 3. — The enhanced representation of UDP-d-xylose biosynthesis pathway in prototype P. trichocarpa PGDB. In this representation the sub-cellular localization of each metabolite in the pathway is specified by a two-letter prefix (Table 3). Note that Figure 2 shows 12 genes annotated as UDP-glucose dehydrogenases and 9 genes annotated as UDP-glucuronate decarboxylase. Manual curation yields only four UDP-glucose dehydrogenase enzymes and six UDP-glucuronate decarboxylase enzymes in Populus. Also note that genes encoding Golgi-localized membrane-bound UDP-glucuronic acid decarboxylase (UXS) can now be distinguished from the same enzyme activity residing in the cytosol.