Table 1. Transmembrane (TM) domain predictions for murine nyctalopin.
Location of TM | ||||||
Program | #TM(s) | C-terminus | N-terminus | TM3 | TM2 | TM1 |
HMMTOP2.0 | 3 | Out | In | 260–278 | 309–328 | 452–473 |
TMPred | 2 | In/Out | In/Out | None | 309–329 | 453–473 |
TopPred2 | 2 | In/Out | In/Out | None | 309–328 | 455–471 |
SOSUI-Mp1 | 1 | In | Out | None | None | 452–473 |
MemPype | 1 | In | Out | None | None | 452–472 |
TMHMM2.0 | 2 | Out | Out | None | 309–329(0.6) | 455–473(0.9) |
DAS | 0 | None | Out | None | None | None |