Table 1.
Statistics for ESTs found in different P. minus organs.
| Features | Standard leaf library | Normalized stem library | Normalized root library |
|---|---|---|---|
| Total number of clones sequenced | 3260 | 2016 | 2016 |
| Number of high-quality sequences | 1977 | 1398 | 1767 |
| Average length of high-quality ESTs (bp) | 630 bp | 600 bp | 600 bp |
| Number of consensus/contigs | 392 contigs | 92 consensus | 130 consensus |
| Number of singletons | 922 | 1179 | 1481 |
| Number of unigene transcripts (UT) | 1314 a | 1271 a | 1611 a |
| Redundant ESTs | 663 (33.5) b | 127 (9) b | 156 (8.8) b |
| Functional analysis: | |||
| UT with GO match | 731 (55.6) c | 657 (51.6) c | 636 (39.4) c |
| Molecular function | 1392 | 1036 | 832 |
| Biological process | 1779 | 1482 | 1321 |
| Cellular component | 816 | 692 | 918 |
| UTs without GO match | 583 (44.4) c | 614 (48.4) c | 975 (60.6) c |
a
Number of unigene transcripts is the total of consensus sequences and singletons;
b
Percentage calculated from a total of quality sequences;
c
Percentage calculated from a total of UTs.