Table 1.
Virusa | Host strain | Clade | Originb | Date of sampling (mo/day/yr) | Haplotype no. | Reference or source |
---|---|---|---|---|---|---|
OtV06_1 | RCC745 | C | South Leucate | 01/19/2006 | 1 | This study |
OtV06_3 | RCC745 | C | La Palme | 01/24/2006 | 2 | 5 |
OtV06_4 | RCC745 | C | La Palme | 01/24/2006 | 3 | This study |
OtV5 | RCC745 | C | Bages-Sigean | 01/24/2006 | 4 | 14 |
OtV06_9 | RCC745 | C | Thau | 02/13/2006 | 4 | This study |
OtV06_11 | RCC745 | C | Thau | 02/13/2006 | 4 | This study |
OtV06_12 | RCC745 | C | Thau | 02/13/2006 | 5 | This study |
OtV08_173 | RCC745 | C | South Leucate | 02/19/2008 | 6 | 6 |
OtV08_180 | RCC745 | C | SOLA | 02/25/2008 | 3 | 6 |
OtV08_210 | RCC745 | C | MOLA | 06/10/2008 | 7 | 6 |
OtV09_551 | RCC745 | C | South Leucate | 03/19/2009 | 4 | This study |
OtV09_552 | RCC745 | C | South Leucate | 03/19/2009 | 8 | This study |
OtV09_553 | RCC745 | C | South Leucate | 03/19/2009 | 9 | This study |
OtV09_555 | RCC745 | C | Thau | 03/23/2009 | 10 | This study |
OtV09_556 | RCC745 | C | Thau | 03/23/2009 | 4 | This study |
OtV09_557 | RCC745 | C | La Palme | 03/27/2009 | 3 | This study |
OtV09_558 | RCC745 | C | La Palme | 03/27/2009 | 8 | This study |
OtV09_559 | RCC745 | C | La Palme | 03/27/2009 | 11 | This study |
OtV09_560 | RCC745 | C | La Palme | 03/27/2009 | 12 | This study |
OtV09_561 | RCC1561 | C | South Leucate | 03/19/2009 | 13 | This study |
OtV09_562 | RCC1123 | C | La Palme | 03/27/2009 | 14 | This study |
OtV09_564 | RCC1123 | C | La Palme | 03/27/2009 | 15 | This study |
OtV09_565 | RCC1123 | C | La Palme | 03/27/2009 | 15 | This study |
OtV09_566 | RCC1110 | C | La Palme | 03/27/2009 | 3 | This study |
OtV09_570 | RCC1110 | C | South Leucate | 03/19/2009 | 16 | This study |
OtV09_573 | RCC1114 | C | La Palme | 03/27/2009 | 10 | This study |
OtV09_574 | RCC1114 | C | La Palme | 03/27/2009 | 5 | This study |
OtV09_575 | RCC1114 | C | La Palme | 03/27/2009 | 17 | This study |
OtV09_576 | RCC1114 | C | La Palme | 03/27/2009 | 18 | This study |
OtV09_577 | RCC1114 | C | South Leucate | 03/19/2009 | 19 | This study |
OtV09_578 | RCC1114 | C | South Leucate | 03/19/2009 | 15 | This study |
OtV09_579 | RCC1558 | C | La Palme | 03/27/2009 | 20 | This study |
OtV09_580 | RCC1116 | C | La Palme | 03/27/2009 | 21 | This study |
OtV09_581 | RCC1116 | C | La Palme | 03/27/2009 | 21 | This study |
OtV09_582 | RCC1116 | C | La Palme | 03/27/2009 | 22 | This study |
OtV09_584 | RCC1117 | C | South Leucate | 03/19/2009 | 20 | This study |
OtV09_585 | RCC1115 | C | Thau | 03/23/2009 | 21 | This study |
OtV09_586 | RCC1115 | C | La Palme | 03/27/2009 | 23 | This study |
OtV09_587 | RCC1115 | C | La Palme | 03/27/2009 | 22 | This study |
OtV09_590 | RCC1115 | C | South Leucate | 03/19/2009 | 21 | This study |
In order to avoid duplication with viral isolate numbers that appear in other publications, we prefixed the original numbers by the year in which the strain was collected.
Global Positioning System coordinates are as follow: SOLA, 42°29′18″N, 3°8′42″E; MOLA, 42°27′11″N, 3°32′36″E; Thau, 43°26′01.40″N, 03°39′54.49″E; La Palme, 42°57′18.04″, 3°0′3.56″E; Bages-Sigean, 43°03′14.76″N, 2°59′51.63″E; South Leucate, 42°48′24″N, 03°01′27″E.