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. Author manuscript; available in PMC: 2013 Mar 2.
Published in final edited form as: J Proteome Res. 2012 Feb 21;11(3):1621–1632. doi: 10.1021/pr2008175

Figure 4.

Figure 4

Figure 4

Figure 4

A) Experimental scan cycle for both DIA and DDA acquisitions B) Histogram of the identifications made using DDA mass spectrometry with Mascot versus DIA mass spectrometry with FT-ARM during equivalent acquisition periods. Inset shows identifications made when DIA acquisition window is reduced from 100 Da to 12 Da. Venn diagram inset showing the overlap between the identifications made with each approach at <5% estimated FDR. C) Histogram shows identifications made when DIA acquisition window is reduced from 100 Da to 12 Da. Venn diagram inset showing the overlap between the identifications made with each approach at <5% estimated FDR.