Table 3.
64 taxa analyzed by 16S rRNA conventional blast analysis and by the new peptide based approach.
| Kegg | Taxon Name | Blast 16S | Peptides S61 | Specific Peptide |
|---|---|---|---|---|
| ban | Bacillus anthracis Ames | 100% | 100% | ISRQLWWGH |
| bar | Bacillus anthracis Ames 0581 | ISRQLWWGH | ||
| cgb | Corynebacterium glutamicum ATCC 13032 Bielefeld | 100% | 100% | ISRQLWWGH |
| cgl | Corynebacterium glutamicum ATCC 13032 Kyowa Hakko | ISRQLWWGH | ||
| sar | Staphylococcus aureus MRSA252 | 100% | > 99% | ISRQLWWGH |
| sas | Staphylococcus aureus MSSA476 | ISRQLWWGH | ||
| sbl | Shewanella baltica OS155 | 100% | > 99% | ISRQLWWGH |
| sbm | Shewanella baltica OS185 | ISRQLWWGH | ||
| ypa | Yersinia pestis Antiqua | 100% | 100% | ISRQLWWGH |
| ypg | Yersinia pestis Angola | ISRQLWWGH | ||
| ypp | Yersinia pestis Pestoides | ISRQLWWGH | ||
| bfr | Bacteroides fragilis YCH46 | > 99% | 100% | ISRQLWWGH |
| bfs | Bacteroides fragilis NCTC9343 | ISRQLWWGH | ||
| cbf | Clostridium botulinum F | > 99% | 100% | ISRQLWWGH |
| cbo | Clostridium botulinum A | ISRQLWWGH | ||
| cpa | Chlamydophila pneumoniae AR39 | > 99% | 100% | ISRQLWWGH |
| cpj | Chlamydophila pneumoniae J138 | ISRQLWWGH | ||
| cta | Chlamydia trachomatis serovar A | > 99% | 100% | ISRQLWWGH |
| ctr | Chlamydia trachomatis serovar D | ISRQLWWGH | ||
| eci | Escherichia coli UTI89 UPEC | > 99% | > 99% | ISRQLWWGH |
| eco | Escherichia coli K-12 MG1655 | ISRQLWWGH | ||
| llc | Lactococcus lactis subsp cremoris SK11 | > 99% | > 99% | ISRQLWWGH |
| llm | Lactococcus lactis subsp cremoris MG1363 | ISRQLWWGH | ||
| mtc | Mycobacterium tuberculosis CDC1551 | > 99% | 100% | ISRQLWWGH |
| mtf | Mycobacterium tuberculosis F11 | ISRQLWWGH | ||
| sag | Streptococcus agalactiae 2603 serotype V | > 99% | > 99% | ISRQLWWGH |
| san | Streptococcus agalactiae NEM316 serotype III | ISRQLWWGH | ||
| stc | Streptococcus thermophilus CNRZ1066 | > 99% | > 99% | ISRQLWWGH |
| ste | Streptococcus thermophilus LMD-9 | ISRQLWWGH | ||
| syd | Synechococcus sp CC9605 | > 99% | V | ISRQLWWGH |
| sye | Synechococcus sp CC9902 | V | ISRQLWWGH | |
| bbr | Bordetella bronchiseptica | > 99% | V | ISRQLWWGH |
| bpe | Bordetella pertussis | V | ISRQLWWGH | |
| pmf | Prochlorococcus marinus MIT 9303 | V | V | ISRQLWWGH |
| pmh | Prochlorococcus marinus MIT 9215 | V | V | ISRQLWWGH |
| tle | Thermotoga lettingae | V | V | ISRQLWWGH |
| tma | Thermotoga maritime | V | V | ISRQLWWGH |
| bth | Bacteroides thetaiotaomicron | V | V | ISRQLWWGH |
| cau | Chloroflexus aurantiacus | V | V | ISRQLWWGH |
| cdi | Corynebacterium diphtheria | V | V | ISRQLWWGH |
| cef | Corynebacterium efficiens | V | V | ISRQLWWGH |
| cha | Campylobacter hominis ATCC BAA-381 | V | V | ISRQLWWGH |
| cje | Campylobacter jejuni NCTC11168 | V | V | ISRQLWWGH |
| cmu | Chlamydia muridarum | V | V | ISRQLWWGH |
| cph | Chlorobium phaeobacteroides | V | V | ISRQLWWGH |
| det | Dehalococcoides ethenogenes | V | V | ISRQLWWGH |
| dge | Deinococcus geothermalis | V | V | ISRQLWWGH |
| dra | Deinococcus radiodurans | V | V | ISRQLWWGH |
| gfo | Gramella forsetii | V | V | ISRQLWWGH |
| rpd | Rhodopseudomonas palustris BisB5 | V | V | ISRQLWWGH |
| aav | Acidovorax avenae | V | V | ISRQLWWGH |
| abu | Arcobacter butzleri | V | V | ISRQLWWGH |
| ade | Anaeromyxobacter dehalogenans | V | V | ISRQLWWGH |
| atu | Agrobacterium tumefaciens C58 UWashDupont | V | V | ISRQLWWGH |
| rpa | Rhodopseudomonas palustris CGA009 | V | V | ISRQLWWGH |
| aae | Aquifex aeolicus | V | V | FFWVARMIM |
| cch | Chlorobium chlorochromatii | V | V | FFWVARMIM |
| chu | Cytophaga hutchinsonii | V | V | FFWVARMIM |
| fnu | Fusobacterium nucleatum | V | V | FFWVARMIM |
| rba | Rhodopirellula baltica | V | V | DTWFSSALWP |
| gme | Geobacter metallireducens | V | V | DTWFSSALWP |
| aau | Arthrobacter aurescens | V | V | DDNGLPTER |
| mga | Mycoplasma gallisepticum | V | V | DTWFSSALWP |
| mpe | Mycoplasma penetrans | V | V | ISRQLWWGH |
Kegg code and taxa names are given in the first 2 columns. Last three columns display the results of the two methods. Blast 16S analysis (3rd column): strains of the same species that were both fully matched (100%) to the same 16S rRNA query hence cannot be distinguished. Additional taxa that cannot be distinguished at an identity threshold of 99% are also indicated. 'V' represents taxa distinguished from each other with an identity level > 99%. S61 Peptide analysis (4th column): strains of the same species that were fully matched, i.e. no difference between the corresponding two sequences exist within the tested range (100%). Additional strains that cannot be distinguished if up to 4 amino-acid differences are allowed between the sequences (99%). 'V' represents taxa distinguished from each other with an identity level > 99%. Last column: SP identification of the sequence.