Table 2. Details of clinical isolates used in this study.

Isolate	Lineage	South African IS6110 Lineage [84]
SAWC 1659	1, PGG1, EAI	-
SAWC 2493	1, PGG1, EAI	-
SAWC 4981	1, PGG1, EAI	-
SAWC 2803	3, PGG1, CAS	F34
SAWC 2240	3, PGG1, CAS	F20
SAWC 2666	3, PGG1, CAS	F33
SAWC 974	3, PGG1, CAS	F25
SAWC 2088	2, PGG1, Atypical Beijing	F31
SAWC 2701	2, PGG1, Atypical Beijing	F27
SAWC 2076	2, PGG1, Typical Beijing	F29
SAWC 1430	4, PGG2	F3
SAWC 3656	4, PGG2, LAM	F26
SAWC 2576	4, PGG2, LAM	F15
SAWC 2525	4, PGG2, LAM	F9
SAWC 1815	4, PGG2, LAM	F11
SAWC 1733	4, PGG2, LAM	F13
SAWC 3100	4, PGG2, LAM	F14
SAWC 1595	4, PGG2, Quebec/S	F28
SAWC 198	4, PGG2, “1 bander”	F110
SAWC 2073	4, PGG2, LCC – “2 bander”	F120
SAWC 233	4, PGG2, LCC – “3 bander”	F130
SAWC 861	4, PGG2, LCC – “4 bander”	F140
SAWC 1162	4, PGG2, LCC – “5 bander”	F150
SAWC 716	4, PGG2, Pre-Haarlem	F19
SAWC 1748	4, PGG2, Pre-Haarlem	F24
SAWC 1127	4, PGG2, Haarlem-like	F6
SAWC 103	4, PGG2, Haarlem-like	F7
SAWC 386	4, PGG2, Haarlem	F1
SAWC 1645	4, PGG2, Haarlem	F10
SAWC 1841	4, PGG2, Haarlem	F4
SAWC 2185	4, PGG2, Haarlem	F2
SAWC 239	4, PGG3, T	F22
SAWC 2901	4, PGG3, T	F16
SAWC 1608	4, PGG3, T	F5
SAWC 1109	4, PGG3, T	F23
SAWC 4302	4, PGG3, T	F18
SAWC 1956	4, PGG3, T	F17
SAWC 1290	4, PGG3, T	F21
SAWC 300	4, PGG3, T	F12
SAWC 1870	4, PGG3, T	F8

Each clinical isolate along with its lineage number [78], PGG group [2], spoligotype family group status [88] and South African IS6110 lineage [84] is listed.