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. Author manuscript; available in PMC: 2013 Aug 1.
Published in final edited form as: J Surg Res. 2011 Oct 21;176(2):549–558. doi: 10.1016/j.jss.2011.09.052

Table 1.

Information of critical genes in each of the four clusters

Cluster
number
Function Gene name
1 Pro-inflammatory Cytokine IL1a
Chemokine Cxcl16, Ccl11, Ccl9
Adaptive immune response regulation Ceacam1
2 Unsaturated fatty acid biosynthesis Acot1, Acot2, Acot3
Fatty acid metabolism Acaa2, Cpt1a, Dci
Synthesis of ketone bodies Hmgcs2
Lipid metabolism and lipid transport Eci1, Pigo, cyp4b1, Adfp, Pnpla8, Pank4, Crot, Etfdh
Cell-cell junctions Ablim3, Acer2, Cdh17
3 Complement and coagulation cascade C2, C4bpa, C8a, Cfh, Masp1, Serping1
N-glycan biosynthesis B4galt1, Dad1, Ddost, Dpagt1, Ganab, Man1b1
Ribosome Rps25, Rps2
Jak-STAT signaling Il13, Il4, Il7, Jak3
TLR4 signaling IRAK1, LBP, TRAF3
Anti-inflammatory cytokine Il13, Il4
Transcription Brca1, Mcm7, Tcf25, Kdm1, Nfyb, Tef, Cited4, Otx1, Sox4, Acvr1, Tbx2, Zfhx2, Dmrt2, Tsc22d1, Ccdc 101
Translation Atpif1, Mrps21, Rps25, Rps2, Mrps11
Protein folding Dnajb11, Ppib, Hyou1, Edem2, Sep15, Pdia6, Dnajc3, Pdia3, Ugcgl1, Sec63, Mlec, Mecp2
Protein degradation Pcolce, Cpn1, caspase 12, Cdc34, Spink3, Hspa5, RGD1306508, Erlec1, Aph1a, Derl2, Os9, Rnf20, Ppp2r5c, Aurkaip1, Prss32, Prepl, Tbl1xr1, St14, P4hb
Protein target Tmed3, Ssr4, Tram1, Sec61a1, Rrbp1, Arfgap2, Gabarap, Erp29, Ssr3, Rrbp1, Sec61a1, Derl1, Gosr2, Cope, Tmed2, Copz1, Copg, Sec13, Abcb10, Kdelr1, Kdelr2, Tram1, Serp1, Ssr3, Atp6v0d1, Rabac1, Vps28
Bile acid production Idi1, tmem97, Npc2, Hsd17b4
4 Insulin signaling pathway Gck, Irs1, Mknk2, Trip10
Phenylalanine metabolism Ddc
Glycine, serine and threonine metabolism Bhmt
Galactose metabolism Gck