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. 2012 Apr 3;7(4):e34306. doi: 10.1371/journal.pone.0034306

Table 1. Tip-Stat interactions detected in the molecular dynamics simulations.

Region I II III
TIP114- pY114 R115 P116 Q117 N118 V119 L120 T121 N122
STAT3 K591 s-s W623 s-s V637 s-s Y640 s-s M648 s-s
R609 s-s Q635 hs-s Y640 m-s I653 s-s
S611 s-s Y657 hs-s
E612 s-m
S613 s-s
TIP114- pY114 R115 P116 Q117 N118 V119 L120 T121 N122
STAT6 R562 s-s E587 s-s L609 s-s Q590 s-hs D596 s-s
S564 s-s I589 s-hs I589 s-s F592 s-s
D565 s-m H585 s-s F592 s-s
S566 s-s
T572 s-s
TIP127- pY127 T128 T129 F130 E131 D132 A133 R134 V135
STAT3 K591 s-s S636 s-m Y640 s-s
R609 s-s Y657 s-s
S611 s-s
S613 s-s
TIP127- pY127 T128 T129 F130 E131 D132 A133 R134 V135
STAT6 K544 s-s N588 s-m I589 s-s R605 s-s D604 s-s D608 m-s
R562 s-s F592 s-s
D565 s-m R605 hs-s
S566 s-s L609 s-s
T572 s-s

Only those interactions that were stable over more than 30% of the simulation time are reported. Residues of Tip are shown in bold and their interacting partners from Stat3/6 are listed in the column below. The letters ‘m’ and ‘s’ denote whether an interaction is formed by the main-chain or side-chain atoms, respectively (e.g. m-s denotes an interaction between the main-chain of the first residue (from Tip) and the side chain of the second residue (from STAT)). ‘hs’ denotes the special situation, in which only the hydrophobic atoms but not the polar part of a sidechain is involved in an interaction. In the top line, the three main interacting regions (I to III) are indicated. Region I comprises the phosphotyrosine itself and the adjacent residue pY+1. Region II comprises residues pY+2 and pY+3. The remaining C-terminal residues (pY+4 to pY+8) constitute region III.