Table 4. RNA transcripts that were down-regulated in the SPB placentas, relative to the STB placentas, according to the microarray experiment (Mann-Whitney test, adjusted by the Benjamini and Hochberg method, adjusted p<0.05).
Probeset ID | GenBank accession number | Gene symbola | Gene namea | Fold-change down-regulatedb |
228697_at | AW731710 | HINT3 | histidine triad nucleotide binding protein 3 | 12.9 |
1558406_a_at | AK000786 | EXPH5 | exophilin 5 | 8.02 |
216766_at | AK025152 | PRKCE | protein kinase C, epsilon | 7.39 |
218002_s_at | NM_004887 | CXCL14 | chemokine (C-X-C motif) ligand 14 | 6.88 |
215191_at | AW836210 | KDM2A | lysine (K)-specific demethylase 2A | 6.63 |
1557512_at | BM664532 | CLIP1 | CAP-GLY domain containing linker protein 1 | 5.90 |
213939_s_at | AI871641 | RUFY3 | RUN and FYVE domain containing 3 | 5.65 |
215599_at | X83300 | — | transcribed locus | 5.61 |
233727_at | AL157472 | — | transcribed locus | 5.60 |
205594_at | NM_014897 | ZNF652 | zinc finger protein 652 | 5.58 |
210701_at | D85939 | CFDP1 | craniofacial development protein 1 | 5.38 |
216813_at | AL512728 | — | transcribed locus | 5.34 |
1557293_at | CA418406 | — | transcribed locus | 5.33 |
231644_at | AW016812 | — | transcribed locus | 5.24 |
1561180_at | AK021807 | LRP11 | low density lipoprotein receptor-associated protein 11 | 5.04 |
… | … | … | … | … |
[Continues on Table S6 b.] |
If a probeset interrogates a RNA transcript with no gene symbol (“—”) approved by the HUGO Gene Nomenclature Committee at the European Bioinformatics Institute (http://www.genenames.org), it is shown as a “transcribed locus”. Other details on the probesets are freely accessible at http://www.netaffx.com.
Only 15 transcripts with the greatest fold-change values are shown. The remaining 171 transcripts are shown in Table S6.
SPB, spontaneous preterm birth; STB, spontaneous term birth.