Table 2. Nucleotide and amino acid p-distances of 2 arenaviruses in blood of Mus minutoides and Lemniscomys rosalia mice in Morogoro, Tanzania, October 13–December 3, 2008, compared with Old World and 2 New World arenaviruses*.
Virus sequence† | Old World arenaviruses |
New World arenaviruses |
||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Dandedong | Ippy | Kodoko | Mobala | Mopeia | Morogoro | Lassa | LCMV | Lujo | Lemn | Minu | Pirital | Pichinde | ||
Dandedong | 0.282 | 0.073 | 0.218 | 0.255 | 0.282 | 0.209 | 0.027 | 0.355 | 0.245 | 0.091 | 0.418 | 0.409 | ||
Ippy | 0.345 | 0.264 | 0.227 | 0.209 | 0.209 | 0.191 | 0.300 | 0.345 | 0.173 | 0.273 | 0.491 | 0.482 | ||
Kodoko | 0.244 | 0.354 | 0.200 | 0.227 | 0.255 | 0.227 | 0.091 | 0.336 | 0.236 | 0.073 | 0.409 | 0.409 | ||
Mobala | 0.318 | 0.315 | 0.315 | 0.136 | 0.127 | 0.145 | 0.227 | 0.327 | 0.209 | 0.236 | 0.482 | 0.464 | ||
Mopeia | 0.310 | 0.295 | 0.351 | 0.256 | 0.055 | 0.145 | 0.273 | 0.345 | 0.182 | 0.255 | 0.482 | 0.464 | ||
Morogoro | 0.327 | 0.324 | 0.360 | 0.262 | 0.241 | 0.136 | 0.282 | 0.364 | 0.209 | 0.282 | 0.491 | 0.473 | ||
Lassa | 0.286 | 0.283 | 0.366 | 0.286 | 0.271 | 0.262 | 0.209 | 0.364 | 0.200 | 0.236 | 0.473 | 0.436 | ||
LCMV | 0.182 | 0.354 | 0.223 | 0.339 | 0.324 | 0.345 | 0.330 | 0.373 | 0.264 | 0.109 | 0.436 | 0.409 | ||
Lujo | 0.351 | 0.393 | 0.360 | 0.372 | 0.387 | 0.405 | 0.399 | 0.357 | 0.373 | 0.336 | 0.500 | 0.500 | ||
Lemn | 0.333 | 0.315 | 0.336 | 0.292 | 0.313 | 0.307 | 0.301 | 0.327 | 0.351 | 0.227 | 0.482 | 0.464 | ||
Minu | 0.211 | 0.360 | 0.241 | 0.301 | 0.348 | 0.348 | 0.339 | 0.244 | 0.354 | 0.324 | 0.436 | 0.409 | ||
Pirital | 0.440 | 0.467 | 0.429 | 0.420 | 0.452 | 0.443 | 0.455 | 0.432 | 0.476 | 0.473 | 0.417 | 0.173 | ||
Pichinde | 0.426 | 0.446 | 0.432 | 0.458 | 0.476 | 0.467 | 0.473 | 0.452 | 0.446 | 0.443 | 0.435 | 0.268 |
*Nucleotides below diagonal; amino acids above diagonal. LCMV, lymphocytic choriomeningitis virus; Lemn, virus sequenced from Lemniscomys rosalia mice (indicated by boldface); Minu, virus sequenced from Mus minutoides mice (indicated by boldface). †Strains and GenBank accession numbers of the sequences used: Dandenong (0710-2678, EU136039), Ippy (Dak An B 188 d, DQ328878), Kodoko (KD42, EF179865), Mobala (Acar 3080, DQ328876), Mopeia (Mozambique, DQ328875), Morogoro (3017/2004, EU914104), Lassa (Josiah, AY628202), LCMV (Armstrong,,AY847351), Lujo (NC_012777), Pirital (VAV 488, AY216505), Pichinde (AN3739, NC_006439). Sequences of arenaviruses in L. rosalia and M. minutoides mice have been deposited in GenBank under accession nos. GU182412 and GU182413, respectively.