Table 2. Oligonucleotide sequences of vertebrate probes used in reverse line blot assay.
Probe ID | Probe name | Nucleotide sequence (5′ → 3′) | Reference sequence |
---|---|---|---|
PRNA010 | Aves | ccgacctccggggacgc | * |
PRNA012 | Passeriformes | GGGCCCGCCCGGCAGCT | * |
PRNA029 | Galliformes | GGGCTCGCCCGGCGGCT | * |
PRNA042 | Squamata/testudines | CGCTGACCTCCGGGGATGC | Sceloporus undulatus (M36359, M59400), Crotaphytus collaris collaris† (FJ797666), Trachemys scripta† (FJ797668), Scincella lateralis (AY217908), Eumeces fasciatus (AY217920), Elaphe obsoleta† (FJ797667), Heterodon platirhinos (M59392) |
PRNA043 | Amphibia | CGCTGACCCCCAGGGATGC | Rana amurensis (AF542043), R. chensinensis (AY145522), Xenopus laevis (X04025) |
PRNA045 | Ruminantia | GGTCAGCCTCCTCCCGGC | Odocoileus virginianus† (FJ797665), Capreolus capreolus L (AY150545), Cervus elaphus L (AY150547), Bos taurus (AY779625) |
PRNA018 | Leporidae | CGGGGGGGTGGGCGCCG | * |
PRNA047 | Leporidae/carnivore | GGTCAGCCTCCCCCCGGC | Sylvilagus floridanus (FJ797663), Procyon lotor† (FJ797659), Felis catus L (AY150542), |
PRNA046 | Canidae | GGTCAGCCTCCCTCCGGC | Canis latrans† (FJ797662), Canis lupus familiaris† (FJ797658), C. lupus familiaris (DQ287955), Vulpes vulpes (AY150549) |
PRNA026 | Sciurus | CGGTCAGCTTCCCCCCGG | * |
PRNA037 | Blarina | AGCCTCCCCTCGGCTCCG | Blarina sp.† (FJ797661) |
PRNA030 | Erinaceus | CTCCCTCCGGCTCCGGC | * |
PRNA017 | Myodes 1 | GAGCTCCCCCGCGGCCC | * |
PRNA050 | Myodes 2 | CGACGGGCGCCGACCCC | Myodes glareolus (AY150543) |
PRNA011 | Murinae/gerbilinae | CCCTCCCGGCTCCGGCCG | * |
PRNA034 | Rattus | CGGTCAGCCCCCTCCCGG | Rattus norvegicus (X01117) |
PRNA033 | Mus | CCGGTGAGCTCCCTCCCGG | Mus musculus (X00686) |
PRNA035 | Sigmodontinae | TCAGCTCCCTCCCGGCCCC | Peromyscus sp.† (FJ797660), Peromyscus leucopus (AY591913) |
PRNA032 | Didelphis | CGGCGGCTTCCCCCTAACC | Didelphis virginiana (J311677) |
PRNA048 | Mephitis | GGTCAGCCTCTCCCCGGC | Mephitis mephitis† (FJ797664) |
*Designed by Pichon et al. 2003 (13). †Sequence obtained in this study.