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. Author manuscript; available in PMC: 2012 Oct 5.
Published in final edited form as: Nature. 2012 Apr 4;484(7392):55–61. doi: 10.1038/nature10944

Figure 3. Genome-wide distribution of marine-freshwater divergence regions.

Figure 3

Whole-genome profiles of SOM/HMM and CSS analyses reveal many loci distributed on multiple chromosomes (plus unlinked scaffolds, here grouped as "ChrUn"). Extended regions of marine-freshwater divergence on chrI, XI, and XXI correspond to inversions (red arrows). Marine-freshwater divergent regions detected by CSS are shown as grey peaks with grey points above chromosomes indicating regions of significant marine-freshwater divergence (FDR 0.05). Genomic regions with marine-freshwater-like tree topologies detected by SOM/HMM are shown as green points below chromosomes.