Table 2. CT values and standard deviation of serial dilutions of SARS-CoV RNA subjected to different real-time RT-PCR assaysa.
GE | Real-time RT-PCR systems | Artus kit n = 4 | Drosten et al. (5) n = 6 | NS pp1ab n = 7 | NS pp1abb n = 7 | SS GPb n = 7 | NS pp1a/NS pp1ab/SS GPb n = 6 |
---|---|---|---|---|---|---|---|
500 | LightCycler | 28.69 ± 0.46 | 28.16 ± 0.04 | 29.57 ± 0.87 | 29.56 ± 0.18 | 29.47 ± 0.53 | 28.53 ± 0.26 |
SDS7700 | n.d. | 27.29 ± 0.09 | 29.63 ± 0.94 | 30.92 ± 0.09 | 26.98 ± 0.65 | 26.11 ± 0.40 | |
50 | LightCycler | 32.68 ± 0.26 | 45.00 | 33.85 ± 0.60 | 32.83 ± 0.41 | 32.83 ± 0.41 | 32.48 ± 0.69 |
SDS7700 | n.d. | 31.62 ± 0.45 | 33.82 ± 0.23 | 34.73 ± 1.04 | 30.33 ± 0.26 | 29.29 ± 0.67 | |
10 | LightCycler | 34.42 ± 0.20 | 45.00 | 36.72 ± 0.42 | 35.99 ± 0.55 | 35.33 ± 0.48 | 34.50 ± 0.25 |
SDS7700 | n.d. | 38.37 ± 4.02 | 35.69 ± 0.35 | 36.94 ± 0.10 | 32.93 ± 0.81 | 32.01 ± 0.44 | |
5 | LightCycler | 35.66 ± 0.40 | 45.00 | 45.00 | 37.61 ± 0.55 | 37.12 ± 0.35 | 37.20 ± 0.30 |
SDS7700 | n.d. | 41.15 ± 2.17 | 37.31 ± 0.77 | 37.64 ± 0.67 | 34.55 ± 0.50 | 34.09 ± 0.24 |
aCT, threshold cycle; SARS-CoV, severe acute respiratory syndrome–associated coronavirus; RT-PCR, reverse transcription–polymerase chain reaction; GE, genome equivalents/assay; pp1ab, nonstructural polyprotein 1ab gene; n.d., not determined. bSee Table 1.