. Author manuscript; available in PMC: 2013 Aug 1.

Published in final edited form as: Mol Psychiatry. 2012 Jan 3;18(2):215–225. doi: 10.1038/mp.2011.172

Table 3.

Core signatures retained after jackknife validation

A: Up-regulated in schizophrenia
Probe	Gene Symbol	Gene Description	Fold Change	Q-value
210057_at	SMG1^g	SMG1 homolog, phosphatidylinositol 3-kinase- related kinase	1.04	0.009
202619_s_at	PLOD2^▲	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2	1.12	0.05
203548_s_at	LPL^▲	lipoprotein lipase	1.11	0.009
^*202975_s_at	RHOBTB3 ^b	Rho-related BTB domain containing	1.16	0.063
^*216048_s_at		3	1.11	0.02
^*213015_at	BBX ^b	bobby sox homolog (Drosophila)	1.05	0.082
213016_at			1.11	0.086
219426_at	EIF2C3 ^b
213187_x_at	FTL	ferritin, light polypeptide	1.11	0.022
207543_s_at	P4HA1^g	prolyl 4-hydroxylase, alpha polypeptide I	1.12	0.074
218345_at	TMEM176A	transmembrane protein 176A	1.10	0.071
221503_s_at	KPNA3	karyopherin alpha 3 (importin alpha 4)	1.02	0.072
209069_s_at	LOC440093^b, ^m H3F3B	multiple gene mappings	1.11	0.020
209747_at	BCYRN1^b, ^g TGFB3	Multiple gene mappings	1.11	0.072

B: Down-regulated in schizophrenia
Probe	Gene Symbol	Gene Description	Fold Change	Q-value
210720_s_at	NECAB3	N-terminal EF-hand calcium binding protein	0.92	0.006
212646_at	RFTN1	raftlin, lipid raft linker 1	0.91	0.006
220807_at	HBQ1	hemoglobin, theta 1	0.91	0.007
^*206355_at 206356_s_at	GNAL	guanine nucleotide binding protein G(olf) subunit alpha	0.91 0.90	0.007 0.048
220741_s_at	PPA2^a, ^g	pyrophosphatase (inorganic) 2	0.92	0.009
204679_at	KCNK1^▲	potassium channel, subfamily K, member 1	0.88	0.087
206215_at	OPCML	opiate binding cell adhesion molecule	0.94	0.074
^*219032_x_at	OPN3^m	opsin 3	0.89	0.027
^*212987_at	FBXO9^▲ ^a, ^b, ^g	F-box protein 9	0.88	0.033
206290_s_at	RGS7	regulator of G-protein signaling 7	0.89	0.043
203719_at	ERCC1	DNA excision repair protein	0.94	0.042
202688_at	TNFSF10^b	tumor necrosis factor (ligand) superfamily, member 10	0.83	0.075
218653_at	SLC25A15	solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15	0.94	0.042
205510_s_at	GABPB1 ^b, ^g FLJ10038	multiple gene mappings	0.93	0.027
^*213924_at	Unknown^a	Unknown	0.89	0.006

insensitive to pre-processing method;

^▲

identified in previous expression profiling study;

Altar study finding;

Bahn study finding;

GSE17612 study finding;

Mclean study finding.

Q-value is an FDR adjusted p-value, see (36)