Table I.
Prediction of Loops of 8–12 Residues in Crystal Structures
| Local loop RMSD (Align Loop, RMSD loop) | Global loop RMSD (Align rest, RMSD loop) | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Target | Loop length | Best | Pred1 | Pred2 | Pred3 | Pred4 | Pred5 | Best | Pred1 | Pred2 | Pred3 | Pred4 | Pred5 |
| 1rcf | 12 | 1.81 | 2.67 | 3.39 | 3.27 | 3.38 | 2.79 | 2.61 | 3.79 | 5.29 | 4.63 | 4.64 | 4.53 |
| 1thw | 12 | 1.84 | 4.61 | 2.4 | 4.53 | 5.94 | 5.87 | ||||||
| 2cpl | 12 | 1.09 | 1.09 | 4.14 | 4.02 | 4.72 | 4.37 | 2.43 | 2.43 | 6.34 | 6.94 | 6.84 | 8.37 |
| 1cyo | 12 | 0.75 | 1.97 | 3.46 | 1.67 | 3.94 | 5.11 | 1.23 | 2.47 | 4.95 | 4.09 | 5.15 | 7.03 |
| 1hfca | 12 | 1.91 | 2.08 | 2.42 | 3.38 | 3.06 | 3.39 | 3.69 | 3.69 | 4.58 | 5.6 | 4.29 | 7.01 |
| 1onc | 12 | 2.19 | 3.24 | 2.19 | 2.95 | 2.94 | 2.99 | 2.91 | 3.83 | 5.26 | 5.36 | 5.66 | 5.22 |
| 1pmy | 12 | 0.57 | 2.47 | 1.79 | 2.28 | 2.64 | 3.79 | 1.24 | 2.97 | 3.13 | 2.98 | 4.07 | 7.02 |
| 1rro | 12 | 1.84 | 2.65 | 2.98 | 3.79 | 2.83 | 2.82 | 4.63 | 6.94 | 7.78 | 8.44 | 6.52 | 7.34 |
| 1scs | 12 | 2.27 | 3.48 | 5.2 | 4.91 | 3.1 | 4.22 | 7.87 | 6.95 | ||||
| 1bkf | 12 | 1.55 | 2.26 | 2.55 | 2.9 | 2.69 | 2.35 | 2.48 | 3.37 | 4.82 | 6.82 | 4.85 | 3.98 |
| 2tgi | 12 | 2.44 | 2.85 | 3.35 | 3.35 | 3.48 | 3.22 | 3.64 | 4.19 | 5.32 | 5 | 4.66 | 4.33 |
| 1eco | 12 | 0.52 | 3.43 | 3.85 | 5.09 | 4.16 | 4.12 | 0.85 | 2.65 | 3.01 | 1.99 | 3.45 | 3.09 |
| 1msc | 12 | 1.96 | 3.64 | 5.08 | 3.57 | 3.96 | 5.17 | 2.57 | 5.5 | 7.3 | 11.9 | 12.6 | 7.9 |
| 1acf | 11 | 1.8 | 2.05 | 3.59 | 3.52 | 3.88 | 2.22 | 2.34 | 2.86 | 4.21 | 4.09 | 4.41 | 3.19 |
| 1cid | 11 | 1.16 | 1.17 | 2.19 | 1.65 | 3.34 | 3.32 | 1.39 | 1.83 | 3.16 | 2.17 | 5.47 | 4.83 |
| 1noa | 11 | 1.68 | 4.14 | 4.35 | 4.7 | 3.43 | 4.35 | 2.59 | 7.22 | 6.7 | 8.3 | 6.51 | 7.7 |
| 1plca | 11 | 1.8 | 2.05 | 2 | 1.8 | 4.59 | 1.84 | 3.42 | 3.42 | 4.89 | 4.08 | 8.35 | 3.57 |
| 1xnb | 11 | 0.91 | 1.62 | 2.67 | 3.3 | 2.72 | 3.17 | 1.39 | 2.41 | 3.42 | 4.45 | 3.67 | 4.6 |
| 4i1b | 11 | 1.17 | 1.13 | 3.72 | 3.64 | 3.11 | 2.03 | 2.03 | 9.71 | 10.3 | 10.83 | ||
| 8dfra | 11 | 1.71 | 1.71 | 2.04 | 3.2 | 3.85 | 2.96 | 2.89 | 2.89 | 4.79 | 6.19 | 6.37 | 6.39 |
| 1aaj | 11 | 1.71 | 2.5 | 2.69 | 2.81 | 3.14 | 2.62 | 2.79 | 3.59 | 4.66 | 5.9 | 7.08 | 6.03 |
| 5p21 | 10 | 1.74 | 2.78 | 2.99 | 2.47 | 2.67 | 2.38 | 2.62 | 4.27 | 3.87 | 3.24 | 3.94 | 3.71 |
| 5fx2 | 10 | 1.93 | 2.79 | 3.42 | 2.3 | 3.77 | 3.92 | 2.29 | 3.23 | 3.55 | 2.6 | 5.32 | 4.7 |
| 1cbs | 8 | 0.74 | 3.65 | 0.74 | 1.74 | 5.41 | 1.74 | ||||||
| 1xnb | 8 | 0.28 | 1.49 | 1.21 | 0.53 | 1.16 | 1.13 | 0.77 | 3.53 | 1.83 | 0.85 | 1.86 | 1.94 |
| 1poa | 8 | 0.44 | 0.54 | 0.97 | 1.01 | 3.94 | 2.71 | 0.76 | 1.23 | 2.1 | 1.59 | 5.56 | 4.84 |
a
Cases where the top cluster contain less than 5% of the total structures. In those cases, the top 5 predictions are selected using DOPEPW+SASA instead; units are in Å. The bold font indicates the best out of the top five predictions.