Table 1.
Mutant |
(°C) |
ΔG(H2O) (kcal/mol) 25 °C |
kcat (s-1) |
kcat/KM (s-1 μM-1) |
ASA* |
Conservation† (%) |
|
Native |
Substitution |
||||||
WT | 51.7 | −4.4 | 11.65 | 3.6 | |||
V40A | 43.2 | −3.31 | 24.05 | 3.22 | 0 | 43.6 | 0.34 |
I61V | 53.4 | −4.52 | 8.99 | 3.7 | 0 | 19.9 | 79 |
V75H | 40.6 | −2.18 | 15.5 | 4.57 | 0.05 | 32 | 0 |
V75I | 39.2 | −2.98 | 18.25 | 5.51 | 0.05 | 32 | 10.3 |
I91V | 49.1 | −3.14 | 17.87 | 5.13 | 0.07 | 33.3 | 29 |
I91L | 41.4 | −2.69 | ND‡ | ND‡ | 0.07 | 33.3 | 20 |
L112V | 47.4 | −2.7 | 11.45 | 2.34 | 0 | 34 | 27.5 |
W133F | 46.3 | −4.4 | 13.45 | 6.79 | 0.05 | 53.6 | 20.6 |
W133V | ND‡ | −1.53 | ND‡ | ND‡ | 0.05 | 53.6 | 0.34 |
I155T | 43.4 | −3.68 | 11.27 | 2.72 | 0.12 | 15.8 | 21 |
I155L | 45.8 | −2.84 | 12.9 | 5.12 | 0.12 | 15.8 | 1 |
I155A | 38.5 | −2.42 | 11.95 | 2.71 | 0.12 | 15.8 | 1 |
I115V | 51.4 | −6 | 10.26 | 2.08 | 0.02 | 55.3 | 34.4 |
I115A | 46.1 | −3.4 | 7.59 | 0.5 | 0.02 | 55.3 | 0 |
V88I | 44.3 | −4.22 | 13.8 | 3.12 | 0.34 | 12.4 | 1.4 |
A145T | 51.3 | −4.13 | 10 | 3.6 | 0.89 | 12.4 | 1.4 |
*ASA (accessible surface area) was calculated by Vadar package (http://vadar.wishartlab.com); cutoff for buried residues is around 0.25.
†Conservation (%) of a native E. coli’s DHFR residue (left column) or a substituted residue (right column) in a given position of 290 aligned mesophylic prokaryotic DHFR sequences retrieved from the Optimal Growth Temperature database (http://pgtdb.csie.ncu.edu.tw).
‡Not determined.