Table 3. SNP genotyping results in SAPHIR (n = 1,726) and NBS (n = 1,832).
SLC11A2 | TMPRSS6 | ||||||
Genotype | rs6580779 | rs161044 | rs150909 | rs149411 | rs11704654 | rs4820268 | rs855791 |
0 | 88.1/88.7% | 88.0/88.7% | 88.0/88.7% | 34.9/38.1% | 66.4/66.2% | 30.2/27.1% | 33.0/29.1% |
1 | 11.6/10.7% | 11.7/10.7% | 11.7/10.7% | 49.3/46.5% | 29.8/30.1% | 48.9/51.5% | 48.0/50.8% |
2 | 0.3/0.6% | 0.3/0.6% | 0.3/0.6% | 15.7/15.4% | 3.9/3.7% | 20.9/21.4% | 19.0/20.1% |
MAF | 6.1/6.0% | 6.1/6.0% | 6.1/6.0% | 40.4/38.7% | 18.8/18.7% | 45.4/47.2% | 43.0/45.5% |
CR | 99.2/99.9% | 99.7/99.9% | 99.7/99.9% | 99.5/99.9% | 99.7/95.6% | 98.8/99.7% | 98.7/100% |
HWE | 0.348/0.089 | 0.539/0.089 | 0.538/0.089 | 0.311/0.431 | 0.313/0.638 | 0.552/0.159 | 0.408/0.323 |
Notes:
The coding of genotypes is indicated in Table 2. SAPHIR data are indicated on the left side of the slash, and NBS data are given on the right side of the slash.
MAF… minor allele frequency.
CR… call rate (genotyping success rate).
HWE… p-value for test for Hardy-Weinberg-Equilibrium.