Table 3. Predicted RNA editing sites in the mitochondrial genome of Huperzia squarrosa using sequences of genes from Marchantia or cDNAs from Isoetes and Selaginella with the software PREPACT.
| gene | Marchantia polymorpha | Isoetes engelmannii | Selaginella moellendorffii | ||||||
| C>U | U>C | total | C>U | U>C | total | C>U | U>C | total | |
| atp1 | 3 | 0 | 3 | 8 | 26 | 34 | 6 | 5 | 11 |
| atp4 | 7 | 1 | 8 | 6 | 5 | 11 | |||
| atp6 | 9 | 0 | 9 | 14 | 19 | 33 | |||
| atp8 | 5 | 2 | 7 | 4 | 6 | 10 | 4 | 7 | 11 |
| atp9 | 7 | 0 | 7 | 8 | 0 | 8 | |||
| cob | 8 | 3 | 11 | 10 | 6 | 16 | |||
| cox1 | 19 | 0 | 19 | 30 | 38 | 68 | |||
| cox2 | 4 | 0 | 4 | 2 | 12 | 14 | 12 | 12 | 24 |
| cox3 | 6 | 0 | 6 | 13 | 19 | 32 | 13 | 12 | 25 |
| nad1 | 16 | 4 | 20 | 19 | 5 | 24 | 14 | 15 | 39 |
| nad2 | 16 | 0 | 16 | 23 | 29 | 52 | 18 | 26 | 44 |
| nad3 | 12 | 0 | 12 | 10 | 4 | 14 | 7 | 5 | 12 |
| nad4 | 21 | 2 | 23 | 23 | 3 | 26 | 17 | 25 | 42 |
| nad4L | 3 | 0 | 3 | 3 | 2 | 5 | 4 | 5 | 9 |
| nad5 | 15 | 7 | 22 | 41 | 42 | 83 | 26 | 40 | 66 |
| nad6 | 10 | 1 | 11 | 13 | 7 | 20 | 5 | 14 | 19 |
| nad9 | 4 | 1 | 5 | 8 | 14 | 22 | 6 | 10 | 16 |
| rpl2 | 15 | 24 | 39 | ||||||
| rpl5 | 6 | 0 | 6 | 4 | 8 | 12 | |||
| rpl6 | 4 | 0 | 4 | ||||||
| rpl10 | 4 | 14 | 18 | ||||||
| rpl16 | 2 | 0 | 2 | ||||||
| rps2 | 3 | 1 | 4 | 5 | 9 | 14 | |||
| rps3 | 5 | 7 | 12 | 16 | 12 | 28 | |||
| rps4 | 5 | 2 | 7 | 5 | 4 | 9 | |||
| rps10 | 1 | 2 | 3 | ||||||
| rps11 | 4 | 2 | 6 | ||||||
| rps12 | 1 | 0 | 1 | ||||||
| rps13 | 8 | 0 | 8 | ||||||
| rps14 | 0 | 0 | 0 | ||||||
| rps19 | 1 | 1 | 2 | ||||||
| sdh3 | 6 | 3 | 9 | 2 | 2 | 4 | |||
| sdh4 | 7 | 2 | 9 | ||||||
| tatC | 13 | 5 | 18 | 12 | 25 | 37 | 14 | 32 | 46 |
| sum | 250 | 84 | 334 | 279 | 297 | 576 | 146 | 208 | 364 |