Table 4. Estimates of genetic diversity (mitochondrial control region) within Otago skink populations and regions.
Pop/region | n | h | Hd | M(S) | π | Tajima's D | Fu's Fs | RI | SSD |
Eastern | 48 | 4 (A–D) | 0.717 | 6(6) | 0.004 | 0.663 | 2.539 | 0.094 | 0.029 |
Falcon | 18 | 2 (A,B) | 0.209 | 1(1) | 0.001 | −0.529 | −0.011 | 0.382 | 0.001 |
Wildlife | 17 | 3 (B–D) | 0.618 | 6(6) | 0.006 | 1.732 | 4.005 | 0.653 | 0.165* |
Alistair's Gully | 13 | 2 (A,B) | 0.282 | 1(1) | 0.001 | −0.274 | 0.240 | 0.270 | 0.001 |
Western | 15 | 2 (E,F) | 0.419 | 6(6) | 0.006 | 1.269 | 5.710 | 0.689 | 0.130 |
Lindis Pass | 5 | 2 (E,F) | 0.400 | 6(6) | 0.006 | −1.146 | 3.022 | 0.680 | 0.118 |
Glenfoyle Stn | 10 | 1 (E) | NA | NA | NA | NA | NA | NA | NA |
Overall | 63 | 6 (A–F) | 0.805 | 47(46) | 0.039 | NA | NA | NA | NA |
Captive animals | 87 | 5 (A,B,G–I) | 0.437 | 23(22) | 0.011 | NA | NA | NA | NA |
n = sample size, h = number of haplotypes (the specific haplotypes present are indicated), Hd = haplotypic diversity, M = total number of mutations, S = number of segregating (polymorphic) sites, π = nucleotide diversity, RI = raggedness index, SSD = sum of squared deviations. Asterisks indicate significant Tajima's D, Fu's Fs statistic, RI and SSD values.