Table 3.
Data collection | M8VL(no DIR) | M8VL+DIR | M8VLSL55P+DIR |
---|---|---|---|
Beamline | ALS 4.2.2 | APS 23-ID-B | APS 23-ID-B |
Wavelength (Å) | 1.000 | 1.033 | 0.722 |
Resolution (Å)a | 1.45 (1.48-1.45) | 1.50 (1.53-1.50) | 1.96 (1.98-1.96) |
Space group | C2221 | P21212 | P43212 |
a,b,c (Å) | 83.66, 93.64, 30.57 | 73.90, 83.53, 35.14 | 83.49, 83.49, 76.35 |
# of observations | 80,786 (2233) | 250,067 (11,950) | 240,775 (12,015) |
# of unique reflections |
21,290 (830) | 35,526 (1758) | 20,018 (977) |
Completeness (%) | 97.7 (79.2) | 99.9 (100.0) | 100.0 (100.0) |
Rsym (%)b | 4.3 (31.7) | 8.7 (53.7) | 8.7 (54.9) |
average I/σ | 30.1 (2.4) | 28.2 (4.2) | 35.5 (4.9) |
| |||
Refinement statistics all refl. > 0.0σF | |||
| |||
Resolution (Å) | 29.2-1.45 | 41.8-1.50 | 37.3-1.96 |
# reflections (working set) |
20,190 | 33,690 | 18,888 |
# reflections (test set) |
1090 | 1779 | 1048 |
Rcryst (%)c | 17.9 | 14.8 | 20.9 |
Rfree (%)d | 20.8 | 18.3 | 24.2 |
# of protein atoms | 845 (29 in alternate conformations) |
1670 (70 in alternate conformations) |
1662 (14 in alternate conformations) |
# of DIR atoms | 0 | 32 (32 in alternate conformations) |
32 (18 in alternate conformations) |
# of waters | 127 | 319 (8 in alternate conformations) |
138 |
| |||
# of solvent atoms | 51 | 12 | 33 |
| |||
Average B-values (Å2) | |||
| |||
Chain A | 18.9 | 11.7 | 32.5 |
Chain B | NA | 15.5 | 46.6 |
DIR | NA | 16.0 | 27.6 |
Wilson B-value (Å2) | 15.1 | 11.7 | 26.6 |
| |||
Ramachandran Plot | |||
| |||
Most favored | 90.3 | 90.7 | 85.4 |
Additionally allowed |
8.6 | 8.2 | 12.9 |
Generously allowed | 0.0 | 0.0 | 0.6 |
Disallowede | 1.1 | 1.1 | 1.1 |
| |||
R.M.S. deviations | |||
| |||
Bond lengths (Å) | .006 | .005 | .011 |
Angles (Å) | 1.12 | 1.30 | 1.45 |
Numbers in parentheses are for the highest resolution shell of data.
Rsym= ∑hkl ∣I- <I>∣ / ∑hkl I
Rcryst = ∑hkl ∣Fo-Fc∣ / ∑hkl ∣Fo∣
Rfree is the same as Rcryst, but for 5% of the data excluded from the refinement
Residue Asn51, which is in a conserved γ turn and is almost always found in this region in antibody structures.