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. Author manuscript; available in PMC: 2013 Mar 27.
Published in final edited form as: Biochemistry. 2012 Mar 14;51(12):2471–2485. doi: 10.1021/bi201422g

Table 3.

Data collection and refinement statistics for M8VL and M8VLSL55P

Data collection M8VL(no DIR) M8VL+DIR M8VLSL55P+DIR
Beamline ALS 4.2.2 APS 23-ID-B APS 23-ID-B
Wavelength (Å) 1.000 1.033 0.722
Resolution (Å)a 1.45 (1.48-1.45) 1.50 (1.53-1.50) 1.96 (1.98-1.96)
Space group C2221 P21212 P43212
a,b,c (Å) 83.66, 93.64, 30.57 73.90, 83.53, 35.14 83.49, 83.49, 76.35
# of observations 80,786 (2233) 250,067 (11,950) 240,775 (12,015)
# of unique
reflections
21,290 (830) 35,526 (1758) 20,018 (977)
Completeness (%) 97.7 (79.2) 99.9 (100.0) 100.0 (100.0)
Rsym (%)b 4.3 (31.7) 8.7 (53.7) 8.7 (54.9)
average I/σ 30.1 (2.4) 28.2 (4.2) 35.5 (4.9)

Refinement statistics all refl. > 0.0σF

Resolution (Å) 29.2-1.45 41.8-1.50 37.3-1.96
# reflections
(working set)
20,190 33,690 18,888
# reflections (test
set)
1090 1779 1048
Rcryst (%)c 17.9 14.8 20.9
Rfree (%)d 20.8 18.3 24.2
# of protein atoms 845 (29 in alternate
conformations)
1670 (70 in alternate
conformations)
1662 (14 in alternate
conformations)
# of DIR atoms 0 32 (32 in alternate
conformations)
32 (18 in alternate
conformations)
# of waters 127 319 (8 in alternate
conformations)
138

# of solvent atoms 51 12 33

Average B-values (Å2)

Chain A 18.9 11.7 32.5
Chain B NA 15.5 46.6
DIR NA 16.0 27.6
Wilson B-value (Å2) 15.1 11.7 26.6

Ramachandran Plot

Most favored 90.3 90.7 85.4
Additionally
allowed
8.6 8.2 12.9
Generously allowed 0.0 0.0 0.6
Disallowede 1.1 1.1 1.1

R.M.S. deviations

Bond lengths (Å) .006 .005 .011
Angles (Å) 1.12 1.30 1.45
a

Numbers in parentheses are for the highest resolution shell of data.

b

Rsym= ∑hkl ∣I- <I>∣ / ∑hkl I

c

Rcryst = ∑hkl ∣Fo-Fc∣ / ∑hkl ∣Fo

d

Rfree is the same as Rcryst, but for 5% of the data excluded from the refinement

e

Residue Asn51, which is in a conserved γ turn and is almost always found in this region in antibody structures.