Table 3.
Number of correlated variants (r2 ≥ 0.8) per bin containing prostate cancer susceptibility loci in 11q13.3
| Correlation Bin | Susceptibility loci | Resequence | 1000 genome | HapMap | Total |
|---|---|---|---|---|---|
| Bin 1 | rs7931342/rs10896449 | 26 (3) | 29 (3) | 18 | 29 (3) |
| Bin 2 | rs12418451/rs10896438 | 23 (2) | 17 (2) | 11 | 28 (4) |
| Bin 3 | rs12793759 | 7 (1) | 9 (2) | 1 | 9 (2) |
| Bin 4 | rs11228565 | 5 | 5 | 3 | 5 |
|
| |||||
| Total | 61 (6) | 60 (6) | 33 | 71 (8) | |
HapMap CEU (release 28) and 1000 Genome CEU (pilot 1 low-coverage data, 10-2010 release) were compared with variants discovered by resequencing