Table 2. Two-point linkage analysis of the Crest locus in the INRA resource population and 15 marker loci.
| Locus | Marker | Recombination fraction | LOD score | Method | Locationa | Contig |
| Crest | MCW317 | 0.09 | 61.37 | Microsatellite | E22C19W28_E50C23 | Contig633.3 |
| Crest | SCN8A | 0.08 | 47.58 | Microsatellite | E22C19W28_E50C23 | Contig164.44 |
| Crest | E22-164.33 | 0.07 | 69.87 | TaqMan | E22C19W28_E50C23 | Contig164.33 |
| Crest | E22-164.30 | 0.07 | 70.14 | TaqMan | E22C19W28_E50C23 | Contig164.30 |
| Crest | HOXC-SCF2 | 0.04 | 18.78 | Pyrosequencing | Un_random/BAC WAG-73F24 | Contig1453.1 |
| Crest | HOXC8-INTR | 0 | 112.59 | TaqMan | WAG-73F24 | |
| Crest | HOXC8-3end | 0 | 110.18 | TaqMan | Un_random/BAC WAG-73F24 | Contig11389.1 |
| Crest | E22-9570 | 0.02 | 96.58 | TaqMan | Un_random | Contig9570.1 |
| Crest | HOXC-SCF1 | 0.08 | 6.54 | Pyrosequencing | Un_random/BAC WAG-73F24 | Contig18292.1 |
| Crest | MYG1 | 0.04 | 83 | TaqMan | Un_random/Linkage group II | Contig303.3 |
| Crest | ROS0306 | 0.04 | 69.63 | Microsatellite | Un_random/Linkage group II | Contig303.14 |
| Crest | MCW188 | 0.06 | 31.17 | Microsatellite | Linkage group II | |
| Crest | E22-663.2 | 0.23 | 24.36 | TaqMan | E22C19W28_E50C23 | Contig663.2 |
| Crest | E22-186.17 | 0.24 | 22.54 | TaqMan | E22C19W28_E50C23 | Contig186.17 |
| Crest | E22-186.52 | 0.25 | 20.58 | TaqMan | E22C19W28_E50C23 | Contig186.52 |
The lower LOD scores reported for HOXC-SCF1 and HOXC-SCF2 reflect the fact that only individuals with a recombination event between MCW317 and E22-186.2 were typed for these markers.
a
Un_random means markers from unassigned contigs; WAG_73F24 represents markers derived from sequences found in BAC WAG_73F24.