Table 3. Gene-based rank correlation of Swedish AD with other GWAS.

Sample	Disease/Trait	genes in model	t (p-value)	variance explained (r2)
Li et al. 2008	AD	13067	5.33 (9.9 × 10−8)	0.0022
Reiman et al. 2007	AD	12872	2.63 (8.5 × 10−3)	0.0005
Lambert et al. 2009	AD	13043	2.38 (1.7 × 10−2)	0.0004
Kathiresan et al. 2009	Triglycerides	12734	4.16 (3.2 × 10−5)	0.0014
Kathiresan et al. 2009	HDL	12712	−0.26 (0.80)	NA
Kathiresan et al. 2009	LDL	12734	−1.0 (0.32)	NA
UK Crohn (Barret et al. 2008)	Crohn disease	12593	0.86 (0.39)	NA
NJ Crohn (Barret et al. 2008)	Crohn disease	12592	0.49 (0.62)	NA
BE Crohn (Barret et al. 2008)	Crohn disease	12592	1.55 (0.12)	NA

Correlation was established using simple linear regression and the maximum number of ranked genes that were shared across each pair of GWAS. NA, not applicable.