Table 1. MM/PBSA analysis of B, methylated B (BM), Z and methylated Z (ZM) DNA.
B | SEB 1 | Z | SEZ 1 | ΔB-Z | BM | SEBM 1 | ZM | SEZM 1 | ΔBM-ZM | |
〈EELE〉 2 | −777.4 | 1.15 | −207.3 | 2.34 | 570.1 | −880.0 | 5.49 | −302.5 | 2.29 | 577.56 |
〈EVDW〉 | −165.7 | 0.29 | −192.2 | 0.30 | −26.5 | −172.1 | 0.29 | −202.7 | 0.29 | −30.59 |
〈EINT〉 | 932.7 | 0.64 | 968.4 | 0.63 | 35.7 | 974.2 | 0.63 | 1016.4 | 0.65 | 42.14 |
〈EMM〉 | −10.4 | 1.19 | 568.8 | 2.34 | 579.3 | −94.0 | 1.24 | 511.2 | 2.31 | 605.24 |
〈EPBSUR〉 | 22.9 | 0.01 | 21.0 | 0.01 | −1.9 | 23.3 | 0.01 | 21.0 | 0.01 | −2.26 |
〈EPBCAL〉 | −4655.9 | 1.05 | −5219.6 | 2.20 | −563.6 | −4627.9 | 1.13 | −5226.0 | 2.18 | −598.09 |
〈EPBSOL〉 | −4633.0 | 1.05 | −5198.5 | 2.20 | −565.5 | −4604.6 | 1.14 | −5204.9 | 2.19 | −600.34 |
〈EPBELE〉 | −5433.4 | 0.38 | −5426.9 | 0.43 | 6.5 | −5524.0 | 0.40 | −5528.4 | 0.40 | −4.40 |
〈EPBTOT〉 | −4643.4 | 0.59 | −4629.7 | 0.61 | 13.8 | −4698.6 | 0.58 | −4693.7 | 0.65 | 4.89 |
-T〈 S〉 | −524.6 | 0.21 | −516.8 | 0.20 | 7.9 | 538.2 | 0.22 | 528.8 | 0.20 | 9.46 |
〈G〉 | −5168.1 | 0.64 | −5146.4 | 0.64 | 21.6 | −5236.8 | 0.63 | −5222.5 | 0.67 | 14.36 |
SE, standard error.
All energy values are in kcal/mol.