Table 1. Properties of the loci used in Ralstonia sp. multilocus sequence analysis (MLSA; 93 sequences).
Gene | Length (bp) | No. of haplotypes | % Polymorphic sites |
πa |
Tajima's Db | Ka/Ksc | ||
---|---|---|---|---|---|---|---|---|
Total | Synonymous | Nonsynonymous | ||||||
gdhA | 966 | 59 | 22.981 | 0.027 | 0.091 | 0.009 | −1.633 | 0.096 |
mutS | 651 | 47 | 28.111 | 0.036 | 0.133 | 0.009 | −1.692 | 0.076 |
ppsA | 630 | 40 | 20.476 | 0.0398 | 0.154 | 0.009 | −0.449 | 0.046 |
adk | 468 | 54 | 6.838 | 0.020 | 0.063 | 0.007 | 0.800 | 0.120 |
leuS | 735 | 49 | 18.503 | 0.025 | 0.086 | 0.009 | −1.244 | 0.099 |
rplB | 738 | 42 | 13.686 | 0.033 | 0.124 | 0.005 | 0.340 | 0.033 |
gyrB | 423 | 65 | 22.695 | 0.028 | 0.091 | 0.011 | −1.451 | 0.117 |
Egl | 666 | 60 | 26.426 | 0.055 | 0.125 | 0.036 | −0.053 | 0.273 |
fliC | 348 | 39 | 12.356 | 0.023 | 0.063 | 0.011 | −0.431 | 0.230 |
Nucleotide diversity, after Jukes and Cantor correction.
Not significant (P>0.05).
Synonymous (s) and nonsynonymous (a) substitution rate calculated by the Nei and Gojobori (1986) method.