Figure 3.

Percentage of integrases in viral contigs and putative prophage assemblies from Subject no. 1. (a) Contigs with integrase homologs are shown in blue and contigs without integrase homologs are shown in red for each subject across all time points. Putative Veillonella phage assemblies from Subject no. 1 on day 1 (b) and day 30 (c). Putative virulence factor homologs virE and yadA are shown in blue, and all other open reading frames are shown in green. (b) Viral contig (27 429 nucleotides, 1421 reads, average coverage 22 × ) on day 1 and (c) viral contig (27 904 nucleotides, 1302 reads, average coverage 20 × ) on day 30. In panels b and c, the genome of V. dispar ATCC17748 is shown, and the proportion of virome reads mapping to different portions of the genome are shown in purple.