Table 1.
Down-and up-regulated genes passing the criteria described in "Results".
| Down-regulated genes | |||
|---|---|---|---|
| No | Gene Symbol | Fold | Description |
| 1 | TMSL3 | -4.21 | Homo sapiens thymosin-like 3 (TMSL3), mRNA [NM_183049] |
| 2 | A_24_P530977 | -4.00 | Unknown |
| 3 | GNG11 | -3.86 | Homo sapiens guanine nucleotide binding protein (G protein), gamma 11 (GNG11), mRNA [NM_004126] |
| 4 | RPS4Y2 | -3.80 | Homo sapiens ribosomal protein S4, Y-linked 2 (RPS4Y2), mRNA [NM_001039567] |
| 5 | RGS10 | -3.63 | Homo sapiens regulator of G-protein signalling 10 (RGS10), transcript variant 1, mRNA [NM_001005339] |
| 6 | RPS4Y1 | -3.62 | Homo sapiens ribosomal protein S4, Y-linked 1 (RPS4Y1), mRNA [NM_001008] |
| 7 | B2M | -3.60 | Homo sapiens beta-2-microglobulin (B2M), mRNA [NM_004048] |
| 8 | CCL5 | -3.35 | Homo sapiens chemokine (C-C motif) ligand 5 (CCL5), mRNA [NM_002985] |
| 9 | AL049447 | -3.35 | Homo sapiens mRNA; cDNA DKFZp586A0722 (from clone DKFZp586A0722). [AL049447] |
| 10 | GPX1 | -3.27 | Homo sapiens glutathione peroxidase 1 (GPX1), transcript variant 2, mRNA [NM_201397] |
| 11 | RPS29 | -3.12 | Homo sapiens ribosomal protein S29 (RPS29), transcript variant 1, mRNA [NM_001032] |
| 12 | IER2 | -3.12 | Homo sapiens immediate early response 2 (IER2), mRNA [NM_004907] |
| 13 | RAP1B | -2.94 | Homo sapiens RAP1B, member of RAS oncogene family (RAP1B), transcript variant 1, mRNA [NM_015646] |
| 14 | MMD | -2.93 | Homo sapiens monocyte to macrophage differentiation-associated (MMD), mRNA [NM_012329] |
| 15 | MAX | -2.89 | Homo sapiens MYC associated factor × (MAX), transcript variant 3, mRNA [NM_145113] |
| 16 | TMEM111 | -2.87 | Homo sapiens transmembrane protein 111 (TMEM111), mRNA [NM_018447] |
| 17 | RPS29 | -2.82 | Homo sapiens ribosomal protein S29 (RPS29), transcript variant 1, mRNA [NM_001032] |
| 18 | RPL19 | -2.81 | Homo sapiens ribosomal protein L19 (RPL19), mRNA [NM_000981] |
| 19 | RPL13 | -2.80 | Homo sapiens ribosomal protein L13 (RPL13), transcript variant 2, mRNA [NM_033251] |
| 20 | LOC392497 | -2.78 | PREDICTED: Homo sapiens similar to 40S ribosomal protein S6 (LOC392497), mRNA [XR_018138] |
| 21 | MRCL3 | -2.74 | Homo sapiens myosin regulatory light chain MRCL3 (MRCL3), mRNA [NM_006471] |
| 22 | RPL30 | -2.72 | Homo sapiens ribosomal protein L30 (RPL30), mRNA [NM_000989] |
| 23 | RPS27 | -2.70 | Homo sapiens ribosomal protein S27 (metallopanstimulin 1) (RPS27), mRNA [NM_001030] |
| 24 | ENST00000337102 | -2.70 | 40S ribosomal protein S21. [Source:Uniprot/SWISSPROT;Acc:P63220] [ENST00000337102] |
| 25 | RPA1 | -2.68 | Homo sapiens replication protein A1, 70 kDa (RPA1), mRNA [NM_002945] |
| Up-regulated genes | |||
| No | Gene Symbol | Fold | Description |
| 1 | CV575560 | 3.80 | oe37f10.y1 Human keratoconus cornea, unamplified, od [CV575560] |
| 2 | RKHD1 | 2.32 | Homo sapiens ring finger and KH domain containing 1 (RKHD1), mRNA [NM_203304] |
| 3 | ZNF784 | 2.65 | Homo sapiens zinc finger protein 784 (ZNF784), mRNA [NM_203374] |
| 4 | SERPINB1 | 2.62 | Leukocyte elastase inhibitor (LEI) (Serpin B1) (Monocyte/neutrophil elastase inhibitor) (M/NEI) (EI). |
| 5 | LOC390427 | 2.00 | PREDICTED: Homo sapiens similar to TBP-associated factor 15 isoform 1 (LOC390427), mRNA [XM_372498] |
| 6 | FOXD3 | 2.32 | Homo sapiens forkhead box D3 (FOXD3), mRNA [NM_012183] |
| 7 | C17orf74 | 1.97 | Homo sapiens chromosome 17 open reading frame 74 (C17orf74), mRNA [NM_175734] |
| 8 | ENST00000357697 | 1.67 | Unknown |
| 9 | SLITRK4 | 2.30 | Homo sapiens SLIT and NTRK-like family, member 4 (SLITRK4), mRNA [NM_173078] |
| 10 | AGRP | 2.03 | Homo sapiens agouti related protein homolog (mouse) (AGRP), transcript variant 1, mRNA [NM_001138] |
| 11 | ENST00000359466 | 1.77 | chromosome × open reading frame 18 (CXorf18), misc RNA [RefSeq_dna;Acc:XR_018001] [ENST00000359466] |
| 12 | THC2760960 | 1.41 | Unknown |
| 13 | TNXB | 2.06 | Homo sapiens tenascin XB (TNXB), transcript variant XB, mRNA [NM_019105] |
| 14 | THC2755576 | 1.90 | ALU1_HUMAN (P39188) Alu subfamily J sequence contamination warning entry, partial (13%) [THC2755576] |
| 15 | SIN3B | 1.60 | Homo sapiens SIN3 homolog B, transcription regulator (yeast), complete cds. [BC063531] |
| 16 | CRLF1 | 1.66 | Homo sapiens cytokine receptor-like factor 1 (CRLF1), mRNA [NM_004750] |
| 17 | ZNF219 | 1.97 | Homo sapiens zinc finger protein 219 (ZNF219), mRNA [NM_016423] |
| 18 | THC2654039 | 1.78 | ALU2_HUMAN (P39189) Alu subfamily SB sequence contamination warning entry, partial (4%) [THC2654039] |
| 19 | AA418814 | 1.59 | AA418814 Soares_NhHMPu_S1 Homo sapiens cDNA clone IMAGE:767978 3', mRNA sequence [AA418814] |
| 20 | TNRC4 | 1.72 | Homo sapiens trinucleotide repeat containing 4 (TNRC4), mRNA [NM_007185] |
| 21 | AK098372 | 1.94 | Homo sapiens cDNA FLJ25506 fis, clone CBR05185. [AK098372] |
| 22 | TNRC6B | 1.79 | Homo sapiens trinucleotide repeat containing 6B (TNRC6B), transcript variant 1, mRNA [NM_015088] |
| 23 | HOXA4 | 1.58 | Homo sapiens homeobox A4 (HOXA4), mRNA [NM_002141] |
| 24 | IL26 | 1.66 | Homo sapiens interleukin 26 (IL26), mRNA [NM_018402] |
| 25 | THC2718728 | 1.73 | Unknown |
"Fold" is calculated as the median value of the fold change in the three described normalization procedures