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Effect of aCGH platforms in the CNV discovery. Absolute CNVs found from two HapMap individuals (NA12878 and NA19240) in this study using the Agilent 24M aCGH array were compared with CNVs found by genotyping microarray in the Genomic Structural Variation Consortium data. We also compared CNVs from AK1 obtained by Agilent 24M and Nimblegen 42M microarrays.
