Table 2.
Validation of BLAST search results.
| PDB | Chain | BLAST result | PDB description |
|---|---|---|---|
| 1ASY | R, S | BLAST gb M25168.1 YSCTRDCER S.cerevisiae Asp-tRNA 149 2e-34 | Yeast aspartyl-tRNA synthetase complexed with tRNA Asp |
| 1ASZ | R, S | BLAST gb M25168.1 YSCTRDCER S.cerevisiae Asp-tRNA 149 2e-34 | Yeast aspartyl-tRNA synthetase complexed with tRNA Asp |
| 1GID | A, B | BLAST emb V01416.1 Fragments of a Tetrahymena gene for 26s rRNA with… 311 8e-83 | Tetrahymena group I INTRON |
| 1HR2 | A, B | BLAST emb V01416.1 Fragments of a Tetrahymena gene for 26s rRNA with… 295 4e-78 | Tetrahymena group I INTRON |
| 1IVS | C, D | BLAST dbj AB080139.1 Thermus thermophilus tRNA-Val 149 2e-34 | Thermus thermophilus valyl-tRNA synthetase complexed with tRNA(VAL) |
| 1U9S | A | BLAST gb AE017221.1 Thermus thermophilus HB27, complete genome 319 3e-85 | Thermus thermophilus |
| 1VTQ | A | BLAST gb M25168.1 YSCTRDCER S.cerevisiae Asp-tRNA 149 2e-34 | Yeast t-RNA-Asp |
| 2CSX | C, D | BLAST gb AE000657.1 Aquifex aeolicus VF5, complete genome 149 2e-34 | Aquifex aeolicus methionyl-tRNA synthetase complexed with tRNA(MET) |
| 2CT8 | C, D | BLAST gb AE000657.1 Aquifex aeolicus VF5, complete genome 147 1e-33 | Aquifex aeolicus methionyl-tRNA synthetase complexed with tRNA(MET) |
| 2CV0 | C, D | BLAST gb AE017221.1 Thermus thermophilus HB27, complete genome 149 2e-34 | Glutamyl-tRNA synthetase from thermus thermophilus in complex with tRNA(GLU) |
| 2CV1 | C, D | BLAST gb AE017221.1 Thermus thermophilus HB27, complete genome 149 2e-34 | Glutamyl-tRNA synthetase from thermus thermophilus in complex with tRNA(GLU) |
| 2CV2 | C, D | BLAST gb AE017221.1 Thermus thermophilus HB27, complete genome 149 2e-34 | Glutamyl-tRNA synthetase from thermus thermophilus in complex with tRNA(GLU) |
| 2DXI | C, D | BLAST gb AE017221.1 Thermus thermophilus HB27, complete genome 149 2e-34 | Glutamyl-tRNA synthetase from thermus thermophilus complexed with tRNA(GLU) |
| 2IHX | B | BLAST gb M21526.1 ALRSRCAC Rous sarcoma virus defective mutant PR2257… 149 2e-34 | Sequence occurs naturally in rous sarcoma virus (RSV) |
| 2NOQ | A | BLAST gb AF218039.1 AF218039 Cricket paralysis virus non-structural pol… 377 e-102 | Ribosome-bound cricket paralysis virus IRES RNA |
| 2ZNI | C, D | BLAST dbj AP008230.1 Desulfitobacterium hafniense Y51 DNA, complete g… 143 1e-32 | Pyrrolysyl-tRNA synthetase-tRNA(PYL) complex from desulfitobacterium hafniense |
| 3AKZ | F, H, G, E | BLAST gb AE000512.1 Thermotoga maritima MSB8, complete genome 147 1e-33 | Thermotoga maritima non-discriminating glutamyl-tRNA synthetase in complex with tRNAGLN |
| 3AL0 | E | BLAST gb AE000512.1 Thermotoga maritima MSB8, complete genome 147 1e-33 | Glutamine transamidosome from thermotoga maritima in the glutamylation state |
| 3FOZ | D | BLAST gb CP002185.1 Escherichia coli W, complete genome 137 3e-3137 8e-31 | E. Coli isopentenyl-tRNA transferase in complex with E. coli tRNA(PHE) |
| 3Q50 | A | BLAST gb AE008691.1 Thermoanaerobacter tengcongensis MB4, complete ge… 66 8e-10 | Based on the sequence of class I, type 1 PREQ1 riboswitch aptamer from T. tengcongensis |
| 3Q51 | A | BLAST gb AE008691.1 Thermoanaerobacter tengcongensis MB4, complete ge… 66 8e-10 | Based on the sequence of class I, type 1 PREQ1 riboswitch aptamer from T. tengcongensis |