Table 2.
Estimates of Plasmodium vivax genetic diversity using GenBank sequences
| Antigen | Region | Country | N | GenBank Accession Number | H | π (s.d.) | Hd (s.d.) |
|---|---|---|---|---|---|---|---|
| TRAP | South East Asia | Thailand | 63 | AF312559-AF312661 | 34 | 0.00707 (0.00029) | 0.961 (0.01) |
| DBPII | South America | Brazil | 126 | DQ156520, EU812839-EU812960, EU870443-EU870445 | 24 | 0.00919 (0.00042) | 0.883 (0.018) |
| Colombia | 17 | DQ156513, U50575-U50590 | 12 | 0.00812 (0.00081) | 0.956 (0.033) | ||
| South Asia | India | 101 | DQ156516, FJ491142-FJ491241 | 28 | 0.01011 (0.00063) | 0.86 (0.028) | |
| Sri Lanka | 100 | GU143914-GU144013 | 14 | 0.00864 (0.00063) | 0.738 (0.039) | ||
| South East Asia | Thailand | 30 | EF219451, EF368159-EF368178, EF379127-EF379135 | 19 | 0.01628 (0.00354) | 0.972 (0.018) | |
| East Asia | Korea | 16 | EU395592, DQ156515, DQ156522-DQ156523, AF215737-AF215738, AF220657, AF220659-AF220667 | 11 | 0.00817 (0.00149) | 0.933 (0.048) | |
| Western Asia | Iran | 11 | EU860428-EU860438 | 8 | 0.01047 (0.00205) | 0.945 (0.054) | |
| Oceania | Papua New Guinea | 200 | AF291096, AF289653, AF469515-AF469602, DQ156512-DQ156523, AY970837-AY970925 | 59 | 0.01166 (0.00041) | 0.888 (0.015) | |
| MSP-1 | South America | Brazil | 8 | AF435622-AF435625, AF435627, AF435629-AF435631 | 4 | 0.00293 (0.00061) | 0.75 (0.139) |
| South East Asia | India | 28 | EU430452-EU430479 | 6 | 0.0172 (0.00049) | 0.489 (0.112) | |
| Thailand | 170 | GQ890872-GQ891041 | 2 | 0.00013 (0.00005) | 0.068 (0.026) | ||
| Singapore | 50 | GU971656-GU971705 | 10 | 0.0019 (0.00032) | 0.407 (0.09) | ||
| Western Asia | Turkey | 30 | AB564559-AB564588 | 2 | 0.00073 (0.00034) | 0.186 (0.088) | |
| East Asia | Korea | 8 | HQ171941-HQ171934 | 1 | 0 | 0 | |
| AMA-1 | South America | Brazil | 65 | EF031154-EF031216, EF031183, EF031184 | 12 | 0.01358 (0.00056) | 0.866 (0.02) |
| Venezuela | 73 | EU346015-EU346087 | 12 | 0.01368 (0.00053) | 0.847 (0.019) | ||
| South Asia | India | 189 | EU282774-EU282822, FJ490963-FJ491062, EF025187-EF025197, GU086369-GU086382, AF171250-AF171254, AF171256, AF171258-AF171260, AF171262-AF171267 | 68 | 0.01427 (0.00036) | 0.945 (0.008) | |
| Sri Lanka | 23 | EF218679-EF218701 | 8 | 0.00722 (0.00148) | 0.83 (0.054) | ||
| East Asia | China | 7 | AF171243-AF171249 | 6 | 0.01211 (0.00193) | 0.893 (0.111) | |
| Korea | 6 | AF357212, AF357213, GU476488, EU395599, AF402593, AF402594 | 4 | 0.00812 (0.00328) | 0.9 (0.161) | ||
| South East Asia | Myanmar | 39 | FJ157247-FJ157285 | 36 | 0.01833 (0.00092) | 0.996 (0.007) | |
| Philippines | 110 | AF171273-AF171382 | 20 | 0.01474 (0.0005) | 0.802 (0.029) | ||
| Thailand | 235 | FJ784891-FJ85121, AF17453-AF171456 | 44 | 0.01488 (0.00039) | 0.899 (0.011) | ||
| Oceania | PNG | 22 | AF171421-AF171426, AF171428-AF171443 | 13 | 0.01379 (0.00163) | 0.913 (0.045) | |
| Solomon Islands | 5 | AF171444, AF171445, AF171447, AF171449, AF171450 | 5 | 0.01855 (0.00318) | 1 (0.126) | ||