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. 2012 Mar 14;11:68. doi: 10.1186/1475-2875-11-68

Table 2.

Estimates of Plasmodium vivax genetic diversity using GenBank sequences

Antigen Region Country N GenBank Accession Number H π (s.d.) Hd (s.d.)
TRAP South East Asia Thailand 63 AF312559-AF312661 34 0.00707 (0.00029) 0.961 (0.01)

DBPII South America Brazil 126 DQ156520, EU812839-EU812960, EU870443-EU870445 24 0.00919 (0.00042) 0.883 (0.018)

Colombia 17 DQ156513, U50575-U50590 12 0.00812 (0.00081) 0.956 (0.033)

South Asia India 101 DQ156516, FJ491142-FJ491241 28 0.01011 (0.00063) 0.86 (0.028)

Sri Lanka 100 GU143914-GU144013 14 0.00864 (0.00063) 0.738 (0.039)

South East Asia Thailand 30 EF219451, EF368159-EF368178, EF379127-EF379135 19 0.01628 (0.00354) 0.972 (0.018)

East Asia Korea 16 EU395592, DQ156515, DQ156522-DQ156523, AF215737-AF215738, AF220657, AF220659-AF220667 11 0.00817 (0.00149) 0.933 (0.048)

Western Asia Iran 11 EU860428-EU860438 8 0.01047 (0.00205) 0.945 (0.054)

Oceania Papua New Guinea 200 AF291096, AF289653, AF469515-AF469602, DQ156512-DQ156523, AY970837-AY970925 59 0.01166 (0.00041) 0.888 (0.015)

MSP-1 South America Brazil 8 AF435622-AF435625, AF435627, AF435629-AF435631 4 0.00293 (0.00061) 0.75 (0.139)

South East Asia India 28 EU430452-EU430479 6 0.0172 (0.00049) 0.489 (0.112)

Thailand 170 GQ890872-GQ891041 2 0.00013 (0.00005) 0.068 (0.026)

Singapore 50 GU971656-GU971705 10 0.0019 (0.00032) 0.407 (0.09)

Western Asia Turkey 30 AB564559-AB564588 2 0.00073 (0.00034) 0.186 (0.088)

East Asia Korea 8 HQ171941-HQ171934 1 0 0

AMA-1 South America Brazil 65 EF031154-EF031216, EF031183, EF031184 12 0.01358 (0.00056) 0.866 (0.02)

Venezuela 73 EU346015-EU346087 12 0.01368 (0.00053) 0.847 (0.019)

South Asia India 189 EU282774-EU282822, FJ490963-FJ491062, EF025187-EF025197, GU086369-GU086382, AF171250-AF171254, AF171256, AF171258-AF171260, AF171262-AF171267 68 0.01427 (0.00036) 0.945 (0.008)

Sri Lanka 23 EF218679-EF218701 8 0.00722 (0.00148) 0.83 (0.054)

East Asia China 7 AF171243-AF171249 6 0.01211 (0.00193) 0.893 (0.111)

Korea 6 AF357212, AF357213, GU476488, EU395599, AF402593, AF402594 4 0.00812 (0.00328) 0.9 (0.161)

South East Asia Myanmar 39 FJ157247-FJ157285 36 0.01833 (0.00092) 0.996 (0.007)

Philippines 110 AF171273-AF171382 20 0.01474 (0.0005) 0.802 (0.029)

Thailand 235 FJ784891-FJ85121, AF17453-AF171456 44 0.01488 (0.00039) 0.899 (0.011)

Oceania PNG 22 AF171421-AF171426, AF171428-AF171443 13 0.01379 (0.00163) 0.913 (0.045)

Solomon Islands 5 AF171444, AF171445, AF171447, AF171449, AF171450 5 0.01855 (0.00318) 1 (0.126)