Table 3.

Anterior brain CNEs used for de novo motif prediction

CNE1.01	142_aatgga	230_ccgctc	262_aatgaa	369_ctgaaa	400_aatgga	440_ccgctc	509_aatgaa	577_gagcgg	657_gagggg
CNE1.06	163_ttcatt	181_gagggg	193_gagcgg	204_aatgaa	233_ttcatt	286_cccctc	309_ttcatt
CNE1.16	3_tttcag	38_tccatt	192_cccctc	222_aatgga	335_gagggg	410_ccgctc	429_aatgaa	592_aatgga
CNE1.20	37_cccctc	253_ctgaaa	285_tccatt
CNE2.01.2	125_aatgaa	243_ttcatt	308_tttcag	553_tttcag	580_aatgaa
CNE2.04	8_tttcag	166_ctgaaa	247_ttcatt	274_gagcgg	481_cccctc	491_ccgctc	499_gagggg	582_gagggg
CNE2.05	67_ccgctc	105_tccatt
CNE2.10	5_gagggg
CNE2.17	185_ccgctc	228_ctgaaa	282_tccatt	398_aatgga	439_gagcgg	492_aatgaa	499_tttcag
CNE3.05	99_tccatt
CNE3.06	253_cccctc	312_aatgaa
CNE6.01	96_ctgaaa	99_tttcag	320_ttcatt	380_ctgaaa
CNE7.11	38_ccgctc	67_tttcag

Note: The numbers indicate the motif location in the CNEs. Both orientations of the motifs are indicated.