Table 1.
Microarray experiments performed with R.leguminosarum biovar viciae Rlv3841
| Array Express accession numbera | Condition 1 | Condition 2 | Biological replicates | Results shown |
|---|---|---|---|---|
| E-MEXP-2844 | Pyruvate/NH4+/hesperetin (1 μM) | Pyruvate/NH4+ | 3 | Additional file 6 |
| E-MEXP-2846 | Pea root exudate | Pyruvate/NH4+ | 3 | Additional file 6 |
| E-MEXP-2845 | 21 day pea rhizosphere 1 dpi | Glucose/NH4+ | 4 | Additional file 6 |
| E-MEXP-2845 | 14 day pea rhizosphere 1 dpi | Glucose/NH4+ | 4 | Additional file 6 |
| E-MEXP-2845, E-MEXP-2848 | 7 day pea rhizosphere 1 dpi | Glucose/NH4+ | 5 | Additional file 6 |
| E-MEXP-2848 | 7 day pea rhizosphere 3 dpi | Glucose/NH4+ | 5 | Additional file 6 |
| E-MEXP-2848, E-MEXP-2852, E-MEXP-2854 | 7 day pea rhizosphere 7 dpi | Glucose/NH4+ | 5 | Additional file 7 |
| E-MEXP-2852 | 7 day alfalfa rhizosphere 7 dpi | Glucose/NH4+ | 3 | Additional file 7 |
| E-MEXP-2852 | 7 day sugar beet rhizosphere 7 dpi | Glucose/NH4+ | 3 | Additional file 7 |
| E-MEXP-2849 | 7 day pea rhizosphere 7 dpi | 7 day alfalfa rhizosphere 7 dpi | 4 | Additional file 6 |
| E-MEXP-2849 | 7 day pea rhizosphere 7 dpi | 7 day sugar beet rhizosphere 7 dpi | 4 | Additional file 6 |
| E-MEXP-2849 | 7 day alfalfa rhizosphere 7 dpi | 7 day sugar beet rhizosphere 7 dpi | 4 | Additional file 6 |
| E-MEXP-2854 | 7 day pea rhizosphere 7 dpi inoculated with 103 CFU | Glucose/NH4+ | 3 | Additional file 6 |
| E-MEXP-2857 | Formate/pyruvate | Pyruvate/NH4+ | 1 | Additional file 9 |
| E-MEXP-2857 | Protocatechuate | Pyruvate/NH4+ | 1 | Additional file 9 |
| E-MEXP-2857 | 4-Hydroxybenzoate | Pyruvate/NH4+ | 1 | Additional file 9 |
| E-MEXP-2857 | Phenylalanine/pyruvate/NH4+ | Pyruvate/NH4+ | 1 | Additional file 9 |
| E-MEXP-2857 | Proline/pyruvate | Pyruvate/NH4+ | 1 | Additional file 9 |
| E-MEXP-2857 | N-limited (glucose/1 mM NH4+) | Glucose/10 mM NH4+ | 1 | Additional file 9 |
| E-MEXP-2857 | L-Arabinose/NH4+ | Glucose/NH4+ | 1 | Additional file 9 |
| E-MEXP-2857 | Galactose/NH4+ | Glucose/NH4+ | 1 | Additional file 9 |
| E-MEXP-2857 | Arabinogalactan/pyruvate/NH4+ | Pyruvate/NH4+ | 1 | Additional file 9 |
Microarrays comparing growth on acetate, acetoacetate, inositol, succinate, glucose and pyruvate as carbon sources have been published previously [8]. All carbon sources were 10 mM, except pyruvate (30 mM), protocatechuate (3 mM), 4-hydroxybenzoate (3 mM), phenylalanine (5 mM), formate (40 mM) and arabinogalactan (10 mg/ml). aWhere two or more accession numbers are given they form part of different time courses. Inoculation of all rhizospheres was performed with 108 CFU unless otherwise stated.