Table 1.

List of antigens shown by significance analysis of microarrays to be bound differently by indicated monoclonal antibodies.

Comparison: 2F5 vs. CL15		Comparison: 4E10 vs. CL15		Comparison: 2G12 vs. CL15		Comparison: 2FS vs. 4E10
CL15 >2F5		CL15 >4E10		CL15 >2G12		4E10 >2F5
Antigen	q-value	Antigen	q-value	Antigen	q-value	Antigen	q-value
Goat anti-mouse IgG and IgM	<0.001	Donkey anti-mouse IgM	<0.001	Goat anti-mouse IgG and IgM	<0.001	4E10 peptide	<0.001
H3N6 peptide	<0.001	MPER1	<0.001	E4.6 peptide	<0.001	H3N6 peptide	<0.001
gp120	<0.001	MPER4	<0.001	H3N6 peptide	<0.001	MPER5	<0.001
HIV-1 V3 loop (1/2)	<0.001	gp120	<0.001	MPER4	<0.001	Mutant 3	<0.001
COS-7 lysate	<0.001	HIV-1 V3 loop (1/2)	<0.001	gp41	<0.001	Mutant 4	<0.001
Actin	<0.001	COS-7 lysate	<0.001	HIV-1 V3 loop (1/2)	<0.001	Mutant 5	<0.001
Aggrecan	<0.001	Mutant 11	<0.001	COS-7 lysate	<0.001
Alpha-actinin	<0.001	Actin	<0.001	MPER-TM1	<0.001
Alpha-ketoglutarate dehydrogenase	<0.001	Aggrecan	<0.001	Mutant 12	<0.001
Beta-2-glycoprotein I	<0.001	Alpha-ketoglutarate dehydrogenase	<0.001	Mutant 13	<0.001
CBir1 flagellin (duplicate)	<0.001	Beta-2-glycoprotein I	<0.001	Actin	<0.001
Cardiolipin C0563	<0.001	CBir1 flagellin (duplicate)	<0.001	Aggrecan	<0.001
CENP-A	<0.001	CENP-A	<0.001	Alpha-actinin	<0.001
CENP-A (duplicate)	<0.001	CENP-A (duplicate)	<0.001	Alpha-ketoglutarate dehydrogenase	<0.001
CENP-B	<0.001	CENP-B	<0.001	CBir1 flagellin (duplicate)	<0.001
Collagen type II	<0.001	Collagen type II	<0.001	Cardiolipin C0563	<0.001
Collagen type VI	<0.001	Collagen type VI	<0.001	CENP-B	<0.001
Collagen type VIII	<0.001	Collagen type VIII	<0.001	Collagen type II	<0.001
Collagen type IX	<0.001	Collagen type IX	<0.001	Collagen type VI	<0.001
dsDNA (plasmid)	<0.001	dsDNA (plasmid)	<0.001	Collagen type VIII	<0.001
dsDNA (genomic)	<0.001	dsDNA (genomic)	<0.001	Collagen type IX	<0.001
Fibrinogen type I-S	<0.001	Fibrinogen type I-S	<0.001	dsDNA (genomic)	<0.001
Fibrinogen type IV	<0.001	GBM antigen dissociated	<0.001	dsDNA (plasmid)	<0.001
GBM antigen dissociated	<0.001	HbV Core Antigen (HBcAg)	<0.001	Fibrinogen type I-S	<0.001
Grp78	<0.001	Histone 2a	<0.001	Fibrinogen type IV	<0.001
H. bilis flagellin	<0.001	Histone 2b	<0.001	GBM antigen dissociated	<0.001
HbV Core Antigen (HBcAg)	<0.001	Histone 1	<0.001	HbV Core Antigen (HBcAg)	<0.001
Histone 2a	<0.001	Histones	<0.001	Histone 2a	<0.001
Histone 2 b	<0.001	HSP47 (Colligin)	<0.001	Histone 2b	<0.001
Histone 1	<0.001	Ku (p70/p80)	<0.001	Histone 1	<0.001
Histones	<0.001	LC 1 antigen	<0.001	Histones	<0.001
HSP90	<0.001	Lysozyme	<0.001	HSP47 (Colligin)	<0.001
Jo-1	<0.001	Mi-2	<0.001	HSP90	<0.001
Ku (p70/p80)	<0.001	Myeloperoxidase	<0.001	Jo-1	<0.001
LC 1 antigen	<0.001	Myeloperoxidase (duplicate)	<0.001	Ku (p70/p80)	<0.001
Mi-2	<0.001	Ovalbumin	<0.001	LC 1 antigen	<0.001
Myeloperoxidase (duplicate)	<0.001	PCNA	<0.001	Mi-2	<0.001
nR2A peptide	<0.001	PDH (duplicate)	<0.001	Myeloperoxidase (duplicate)	<0.001
PCNA	<0.001	PM/Scl-100	<0.001	nR2A peptide	<0.001
PDH (duplicate)	<0.001	PM/Scl-100 (duplicate)	<0.001	PCNA	<0.001
PL-12	<0.001	PR3-Aro	<0.001	PDH (duplicate)	<0.001
PL-7	<0.001	Scl-70 truncated	<0.001	PL-7	<0.001
PM/Scl-100	<0.001	SRC-3000	<0.001	PL-12	<0.001
PM/Scl-100 (duplicate)	<0.001	ssDNA	<0.001	PM/Scl-100	<0.001
Ribo P	<0.001	TPO	<0.001	PM/Scl-100 (duplicate)	<0.001
Scl-70 truncated	<0.001	TPO (duplicate)	<0.001	Scl-70 truncated	<0.001
SRC-3000	<0.001	U1-snRNP-A	<0.001	SRC-3000	<0.001
ssDNA	<0.001	U1-snRNP-A (duplicate)	<0.001	ssDNA	<0.001
TPO	<0.001			TPO	<0.001
TPO (duplicate)	<0.001			TPO (duplicate)	<0.001
U1-snRNP-A	<0.001			U1-snRNP-A	<0.001
U1-snRNP-A (duplicate)	<0.001			U1-snRNP-A (duplicate)	<0.001
U1-snRNP-C	<0.001			U1-snRNP-C	<0.001

2F5 >CL15		4E10 >CL15		2G12 >CL15		2F5 >4E10
Antigen	q-value	Antigen	q-value	Antigen	q-value	Antigen	q-value
2F5 peptide	<0.001	4E10 peptide	<0.001			2F5 peptide	<0.001
E4.6 peptide	<0.001	MPER5	<0.001			E4.6 peptide	<0.001
MPER2	<0.001					MPER2	<0.001
MPER3	<0.001					MPER3	<0.001
						MPER4	<0.001
						Mutant 11	<0.001
						Mutant 12	<0.001