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. Author manuscript; available in PMC: 2013 Mar 1.
Published in final edited form as: Nat Protoc. 2012 Mar 1;7(3):562–578. doi: 10.1038/nprot.2012.016

TABLE 5.

Differentially expressed and regulated gene calls made for the example data set.

Differentially expressed genes 308
Differentially expressed transcripts 165
Differentially expressed TSS groups 226
Differentially expressed coding sequences 118
Differentially spliced TSS groups 75
Genes with differential promoter use 175
Genes with differential CDS output 42