TABLE 5.
Differentially expressed and regulated gene calls made for the example data set.
| Differentially expressed genes | 308 |
| Differentially expressed transcripts | 165 |
| Differentially expressed TSS groups | 226 |
| Differentially expressed coding sequences | 118 |
| Differentially spliced TSS groups | 75 |
| Genes with differential promoter use | 175 |
| Genes with differential CDS output | 42 |