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. Author manuscript; available in PMC: 2013 May 1.
Published in final edited form as: Exp Neurol. 2011 Dec 29;235(1):162–173. doi: 10.1016/j.expneurol.2011.12.037

Table 4. Changes in gene expression after conditioning lesions compared to naïve control animals.

Numbers indicate probe sets changing at the criteria indicated. Numbers in parentheses indicate the number of significantly upregulated (+) and down regulated (−) probe sets. Percentage numbers in column 3 and 4 represent the percentage of probe sets changed at the criteria indicated (>1.2-fold and >2-fold). Detailed data for each probe set can be found in Supplementary Table 2. Significant changes were determined at p<0.05 at a false discovery rate of 5%. As many genes are represented by more than one probe set, the number of significantly changed genes is lower than the number of significantly changed probe sets.

Group # significantly changed probe sets # of probe sets with 20% change # of probe sets with > 100% change
Any Day 5979 4838 340
Conditioning Lesion Day 1 1479 (+861; −618) 1270 (+773; −497) (85.9%) 118 (+114; −4) (7.9%)
Conditioning Lesion Day 3 3709 (+ 2045; −1664) 2919 (+ 1721; −1198) (78.7%) 171 (+162; −9) (4.6%)
Conditioning Lesion Day 7 2336 (+ 1159; −1177) 2080 (+ 1083; −997) (89.0%) 176 (+167; −9) (7.5%)
Conditioning Lesion Day 14 4120 (+ 2262; −1858) 3267 (+ 1867; −1400) (79.3%) 238 (+230; −8) (5.8%)