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. 2012 Mar 1;33(5):1059–1064. doi: 10.1093/carcin/bgs116

Table V.

Top 15 genes associated to LC among the 211 DNA repair genes

Gene Pathway Chromosome Number of SNPs P Pcorrected
UBE2N RPU 12 7 3.25 × 10−8 6.86 × 10−6
SMC1L2 CHS 22 11 1.70 × 10−6 3.59 × 10−4
POLB POL 8 3 3.51 × 10−6 7.40 × 10−4
RAD52 HR 12 9 6.14 × 10−5 1.29 × 10−2
POLN POL 4 20 3.09 × 10−4 6.31 × 10−2
BRCA2 HR 17 21 5.50 × 10−4 0.11
MAD2L1 CHS 4 5 9.69 × 10−4 0.18
FANCA SDA 16 9 2.72 × 10−3 0.44
PRKDC NHEJ 8 5 2.75 × 10−3 0.44
CHEK2 CCR 22 6 4.03 × 10−3 0.57
TOPBP1 TEL 3 12 4.29 × 10−3 0.60
DCLRE1B NHEJ 1 9 6.21 × 10−3 0.73
RAD54L HR 1 4 7.02 × 10−3 0.77
MSH4 MMR 1 11 7.10 × 10−3 0.78
FANCJ SDA 17 11 8.10 × 10−3 0.82

CCR, cell cycle regulation; MMR, mismatch repair; NHEJ, non-homologous end joining; P, P-value of the gene-based association test adjusting for study, age, sex and tobacco smoking; Pcorrected, Dunn-Šidák-corrected P-value (211 tests); POL, DNA polymerases; TEL, telomerases, topoisomerases and accessory proteins.