Table 5.

Comparison of several computational methods for target gene prediction

	ROC AUC
	Number of target genes	HIS+PSSM	HIS alone	PSSM alone (FIMO)	Cluster-Buster	MCAST	EEL	Stubb
ABF1	549	0.830	0.736	0.781	0.776	0.676	0.807	0.893
FHL1	207	0.957	0.963	0.827	0.855	0.874	0.852	0.887
FKH1	284	0.656	0.625	0.606	0.680	0.546	0.661	0.725
FKH2	216	0.723	0.694	0.664	0.698	0.566	0.688	0.735
HAP1	215	0.738	0.711	0.635	0.675	0.624	0.676	0.663
RAP1	408	0.865	0.818	0.805	0.752	0.774	0.802	0.811
REB1	278	0.773	0.623	0.774	0.727	0.818	0.765	0.758
SWI4	252	0.831	0.790	0.634	0.680	0.626	0.664	0.651
SWI6	230	0.809	0.768	0.719	0.720	0.629	0.742	0.665
UME6	298	0.854	0.767	0.831	0.774	0.783	0.814	0.815

HIS, histone modification-based method.