Figure 2. Distribution of minor allele frequencies on the Metabochip, the Affymetrix 6.0, and the Illumina 1 M.

Same comparison as in Figure 1, except that in this figure the minor allele frequencies on the Metabochip are determined from the Malmö, Sweden, sample while those on the Affymetrix 6.0 and Illumina 1 M GWAS arrays are determined from the HapMap CEU sample.