Table 2. Measures of graph structure and topology across various tumor and normal networks.

Network	PCC cutoff	Nodes	Edges	Average degree	Clustering coefficient	Diameter	Fraction of nodes in giant component	Assortativity
HCC-Net	0.76	3155	20975	13.1	0.38	19	0.78	0.31
HCV-Net	0.73	6661	134735	40.5	0.44	16	0.96	0.15
Progression-Net	0.65	13801	549499	79.6	0.40	14	0.98	0.23
Breast-Net	0.66	8918	351819	78.9	0.44	12	0.99	0.25
Colon-Net	0.75	7889	265520	67.3	0.41	15	0.98	0.20
Prostate-Net	0.59	16955	2703937	318.9	0.54	11	0.99	0.23
Normal-Net	0.77	5483	114126	41.6	0.52	18	0.93	0.28
Conserved-Net	NA	798	2012	5.0	0.32	10	0.28	0.49

HCC = Hepatocellular Carcinoma; HBV = Hepatitis B Virus, HCV = Hepatitis C Virus, PCC = Pearson correlation coefficient.