Table 2. Measures of graph structure and topology across various tumor and normal networks.
Network | PCC cutoff | Nodes | Edges | Average degree | Clustering coefficient | Diameter | Fraction of nodes in giant component | Assortativity |
HCC-Net | 0.76 | 3155 | 20975 | 13.1 | 0.38 | 19 | 0.78 | 0.31 |
HCV-Net | 0.73 | 6661 | 134735 | 40.5 | 0.44 | 16 | 0.96 | 0.15 |
Progression-Net | 0.65 | 13801 | 549499 | 79.6 | 0.40 | 14 | 0.98 | 0.23 |
Breast-Net | 0.66 | 8918 | 351819 | 78.9 | 0.44 | 12 | 0.99 | 0.25 |
Colon-Net | 0.75 | 7889 | 265520 | 67.3 | 0.41 | 15 | 0.98 | 0.20 |
Prostate-Net | 0.59 | 16955 | 2703937 | 318.9 | 0.54 | 11 | 0.99 | 0.23 |
Normal-Net | 0.77 | 5483 | 114126 | 41.6 | 0.52 | 18 | 0.93 | 0.28 |
Conserved-Net | NA | 798 | 2012 | 5.0 | 0.32 | 10 | 0.28 | 0.49 |
HCC = Hepatocellular Carcinoma; HBV = Hepatitis B Virus, HCV = Hepatitis C Virus, PCC = Pearson correlation coefficient.