Table 1. Number of differentially expressed genes between each combination of time points and sporangia.

	2 dpi†	3 dpi	4 dpi	6 dpi	8 dpi	Sporangia
1 dpi	147 (50%)§	193 (58%)	189 (57%)	175 (60%)	192 (59%)	177 (50%)
2 dpi		848 (28%)	329 (10%)	306 (7%)	898 (19%)	246 (16%)
3 dpi			560 (14%)	301 (7%)	891 (17%)	391 (13%)
4 dpi				342 (7%)	820 (16%)	425 (14%)
6 dpi					644 (10%)	559 (15%)
8 dpi						1,301 (32%)

^†dpi = days post-inoculation.

^§Numbers in parenthesis indicate the percent of significantly different tests out of the total number of tests that could be performed for each pairwise comparison.

Differential expression analysis was conducted using the CuffDiff program in Cufflinks version 0.9.3 [56] using the Pseudoperonospora cubensis annotation with a false discovery rate of 0.01.