Table 1. Major characteristics of DGEP libraries and mapping information.
Sample | Raw | Trim adaptor | Drop low quality | Drop CopyNum = 1 (clean tags) | Distinct clean tags | Mapped tags | Mapping rate |
0 h | 3503924 | 3420205 | 3420205 | 3314401 | 135590 | 113281 | 83.55% |
24 h | 3202434 | 3061865 | 3023002 | 2743030 | 207118 | 135265 | 65.31% |
48 h | 3719941 | 3173209 | 3166328 | 2986395 | 92100 | 135265 | 75.32 |
72 h | 7762517 | 3487600 | 3474314 | 3373054 | 98148 | 72965 | 74.34% |
Trim adaptor: adaptor tags were filtered.
Drop low quality: low quality tags were filtered.
Drop CopyNum = 1: tags of copy number = 1 were filtered.
Distinct clean tags: different kinds of clean tags.