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. 2012 Apr 24;7(4):e35974. doi: 10.1371/journal.pone.0035974

Table 1. Calculated boundaries for viral IDRs and highest proline density.

IDR Polyproline
ID start stop max start stop Pro avg P
AY535004 Av 533 618 0.845 560 562 19 18.8
GU345042 Ra 570 678 0.612 595 624 22 22.5
M80581 1 711 778 0.604 729 754 18 16.6
M74506 2 701 717 0.211 759 760 14
AB369691 3b 720 788 0.748 729 781 27 27.0
EU723515 3f 710 818 0.641 758 810 35 27.0
AB220972 4 710 795 0.682 726 747 22 20.5
AB602441 WB 711 799 0.641 770 771 20 17.5
DQ085338 Rub 713 808 0.943 730 770 26 26.0
HQ731075 CTV 637 725 0.577 710 712 19

ID shows GenBank accession numbers for sequences used in the IDR calculation (DISOPRED2 [25]) and the polyproline sliding-window analysis. Class codes to right of each ID are: Av, avian; Ra, rat; genotype 1; genotype 2; subgenotype 3b; subgenotype 3f; genotype 4; WB, Japanese wild boar; Rub, rubivirus and CTV, cutthroat trout virus. The start and stop positions are those obtained from each calculation. Max is the maximum disorder probability in the PPR (threshold = 0.05). Pro lists the number of prolines in each PPR IDR. Avg P is the average number of prolines in all members of a class. Empty avg P indicates presence of only a single member in that class.