Table 1. Calculated boundaries for viral IDRs and highest proline density.
IDR | Polyproline | |||||||
ID | start | stop | max | start | stop | Pro | avg P | |
AY535004 | Av | 533 | 618 | 0.845 | 560 | 562 | 19 | 18.8 |
GU345042 | Ra | 570 | 678 | 0.612 | 595 | 624 | 22 | 22.5 |
M80581 | 1 | 711 | 778 | 0.604 | 729 | 754 | 18 | 16.6 |
M74506 | 2 | 701 | 717 | 0.211 | 759 | 760 | 14 | |
AB369691 | 3b | 720 | 788 | 0.748 | 729 | 781 | 27 | 27.0 |
EU723515 | 3f | 710 | 818 | 0.641 | 758 | 810 | 35 | 27.0 |
AB220972 | 4 | 710 | 795 | 0.682 | 726 | 747 | 22 | 20.5 |
AB602441 | WB | 711 | 799 | 0.641 | 770 | 771 | 20 | 17.5 |
DQ085338 | Rub | 713 | 808 | 0.943 | 730 | 770 | 26 | 26.0 |
HQ731075 | CTV | 637 | 725 | 0.577 | 710 | 712 | 19 |
ID shows GenBank accession numbers for sequences used in the IDR calculation (DISOPRED2 [25]) and the polyproline sliding-window analysis. Class codes to right of each ID are: Av, avian; Ra, rat; genotype 1; genotype 2; subgenotype 3b; subgenotype 3f; genotype 4; WB, Japanese wild boar; Rub, rubivirus and CTV, cutthroat trout virus. The start and stop positions are those obtained from each calculation. Max is the maximum disorder probability in the PPR (threshold = 0.05). Pro lists the number of prolines in each PPR IDR. Avg P is the average number of prolines in all members of a class. Empty avg P indicates presence of only a single member in that class.