Table 2. Tp53 mutation and HPV DNA detection in skin lesions, perilesions and non-lesional control samples from subjects with and without SCC.
SCC subjects | Control subjects | P1 (les vs. peri) | P2 (les vs. sun) | P3 (peri vs. sun) | |||||
Lesional tissue (n = 55) | Perilesion tissue (n = 55) | Non-lesional sun-exposed tissue (n = 41) | Non-lesional sun-protected tissue (n = 41) | ||||||
Tp53 Mutations | |||||||||
Any | 18 (33%) | 9 (16%)* | 1 (2%)** | 2 (5%) | 0.03 | <0.001 | 0.04 | ||
Single | 14 (25%) | 8 (15%) | 1 (2%) | 0 (0%) | |||||
Multiple | 4 (7%) | 1 (2%) | 0 (0%) | 2 (5%) | |||||
Non-synonymous coding mutations | |||||||||
Any | 17 (31%) | 8 (15%)* | 0 (0%)** | 2 (5%) | 0.03 | <0.001 | 0.01 | ||
Single | 14 (25%) | 7 (13%) | 0 (0%) | 1 (2%) | |||||
Multiple | 3 (5%) | 1 (2%) | 0 (0%) | 1 (2%) | |||||
UV-damage C→T or CC→TT transition mutations | |||||||||
Any | 13 (24%) | 7 (13%) | 0 (0%)** | 2 (5%) | 0.11 | <0.001 | 0.02 | ||
Single | 12 (22%) | 6 (11%) | 0 (0%) | 1 (2%) | |||||
Multiple | 1 (2%) | 1 (2%) | 0 (0%) | 1 (2%) | |||||
“Hotspot” Mutations ^ | |||||||||
Any | 11 (20%) | 4 (7%) | 0 (0%)** | 0 (0%) | 0.05 | 0.002 | 0.13 | ||
Single | 10 (18%) | 4 (7%) | 0 (0%) | 0 (0%) | |||||
Multiple | 1 (2%) | 0 (0%) | 0 (0%) | 0 (0%) | |||||
HPV DNA | 35/53 (66%) | 29/53 (55%) | 24/40 (60%) | 21/41 (51%) | 0.13 | 0.55 | 0.61 | ||
Beta 2 HPV Species | 4/20 (20%) | 4/20 (20%) | 17/40 (43%) | 14/41 (34%) | 1.00 | 0.15 | 0.15 |
p-value<0.05 for cases compared to perilesions (McNemar’s Test).
p-value<0.05 for cases compared to sun-exposed controls (Chi-Square test).
Hotspots include Arg248Trp, Arg196Stop, and His179Stop.