Table 3.

The number of differentially expressed gene patterns in Minghui 63 under non-stress condition and severe stress conditions in drought-tolerant IR77298-14-1-2-B-10

Subfamily	No. of genes	Root		Leaf		Panicle
		Up (%)	Down (%)	Up (%)	Down (%)	Up (%)	Down (%)
Minghui 63 under normal conditions
TIP	10 (14)	2 (20)	0	1 (10)	0	0	0
NAM/CUC3	13 (17)	3 (23)	0	2 (15)	1 (7)	0	1 (7)
NAC1	5 (6)	1 (20)	0	1 (20)	0	1 (20)	0
NAC22	5 (5)	0	0	0	0	0	0
SND	10 (14)	0	0	1 (10)	0	1 (10)	0
ANAC34	10 (13)	0	1 (10)	1 (10)	0	0	1 (10)
SNAC	14 (14)	1 (7)	1 (7)	0	2 (28)	0	2 (28)
ONAC4	14 (14)	2 (28)	0	1 (7)	0	1 (7)	0
ONAC2	16 (16)	0	0	2 (12)	0	0	0
ONAC3	15 (17)	1 (6)	0	1 (6)	1 (6)	1 (6)	1 (6)
ONAC1	8 (8)	0	0	0	0	0	0
ONAC7	5 (5)	1 (20)	0	0	1 (20)	0	1 (20)
IR77298-14-1-2-B-10 under severe stress conditions
TIP	9 (14)	2 (22)	3 (33)	2 (22)	1 (11)	4 (44)	1 (11)
NAM/CUC3	11 (17)	0	3 (27)	8 (72)	1 (9)	3 (27)	3 (27)
NAC1	4 (6)	0	2 (50)	2 (50)	1 (25)	0	3 (75)
NAC22	4 (5)	0	4 (100)	1 (25)	1 (25)	1 (25)	2 (50)
SND	8 (14)	3 (37)	1 (12)	1 (12)	2 (25)	2 (25)	2 (25)
ANAC34	9 (13)	1 (11)	5 (45)	0	7 (77)	2 (22)	0
SNAC	14 (14)	1 (7)	5 (36)	10 (71)	0	8 (57)	2 (14)
ONAC4	10 (14)	1(10)	1 (10)	2 (20)	0	5 (50)	3 (30)
ONAC2	10 (16)	2 (20)	1 (10)	3 (30)	3 (30)	0	2 (20)
ONAC3	11 (17)	0	2 (18)	1 (9)	1 (9)	2 (18)	3 (27)
ONAC1	4 (8)	0	3 (75)	1 (25)	3 (75)	1 (25)	1 (25)
ONAC7	4 (5)	1 (25)	3 (75)	1 (25)	3 (75)	1 (25)	1 (25)

Bold values indicate greater difference between normal and stressed conditions

() = the number of genes in each subfamily is indicated in parentheses, classification by Nuruzzaman et al. (2010). Selected tissues from Minghui 63, Root = seedling with 2 tillers, Leaf 1 = young panicle at stage 3, Panicle 1 = young panicle at stage 3, Up = up-regulated genes, Down = down-regulated genes