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. Author manuscript; available in PMC: 2012 Apr 25.
Published in final edited form as: Neuroinformatics. 2011 Sep;9(2-3):263–278. doi: 10.1007/s12021-011-9121-2

Figure 6.

Figure 6

Graphic user interface of the Neural Circuit Tracer. The image stack viewer (left) is based on ImageJ core. It displays the z projection of the trace superimposed on a given z-slice of the image stack. The image stack viewer makes it possible to manually trace neurites or edit automated traces in 3D. The trace can be displayed inside the ImageJ 3D viewer plug-in to facilitate manual tracing (right).