Table 1.
P values obtained in standard association test and marker-assisted association test and additive effects of the seven SNP
| Gene | Polymorphism | P-sa | P-ma | Allele | Additive effect ± s.e. (cm2) |
|---|---|---|---|---|---|
| HMGA2 (JF748727) | g.2836 A > G | 9.19E-46 | 1.92E-05 | A | -32.84 ± 5.46 |
| g.215 C > T | 5.04E-26 | 1.23E-03 | T | 27.40 ± 5.37 | |
| g.1799 G > A | 1.60E-19 | 0.04 | G | 22.54 ± 4.76 | |
| SOX5 (JF748729) | g.9084 T > C | 3.51E-07 | 0.03 | C | 32.56 ± 7.25 |
| g.9908 T > C | 4.54E-25 | 0.02 | C | 15.72 ± 5.00 | |
| g.12328 T > G | 8.12E-07 | 0.11 | G | -15.28 ± 5.02 | |
| PTHLH (JF748728) | g.9440 T > C | 5.12E-07 | 0.03 | C | 11.74 ± 5.15 |
P-sa: P values in standard association analysis; P-ma: P values in marker-assisted association analysis; s.e.: standard error; the negative values indicate decrease in ear size